mRNA_M-pyrifera_M_contig124614.5005.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124614.5005.1
Unique NamemRNA_M-pyrifera_M_contig124614.5005.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: UPI001905F5E2 (LETM1-like protein-domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001905F5E2)

HSP 1 Score: 62.8 bits (151), Expect = 3.640e-10
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYIALS 153
            HYW GTKLLA E+K+   LLR+  +GK L+RRERRQL RT+ DLLR I  S
Sbjct:   98 HYWDGTKLLASEIKISARLLRRTLQGKALTRRERRQLRRTTQDLLRLIPFS 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A8H3YG18_9TREE (Mitochondrial proton/calcium exchanger protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3YG18_9TREE)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYIALS 153
            HYWAGTKLL  E+K+   + RKV  G +L+RRERRQL RT+TDLLR I  S
Sbjct:  178 HYWAGTKLLGKEIKISSKITRKVLNGGQLTRRERRQLRRTTTDLLRLIPFS 228
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A8H8ILZ3_9AGAM (Mitochondrial proton/calcium exchanger protein n=3 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8ILZ3_9AGAM)

HSP 1 Score: 61.6 bits (148), Expect = 9.310e-10
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYI 144
            HYW G+KLLA EV+V   LLRKV  G  L+RRERRQL RT+TDLLR I
Sbjct:  154 HYWDGSKLLAAEVRVSSKLLRKVLNGARLTRRERRQLTRTTTDLLRLI 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A482T0K9_9ARCH (LETM1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0K9_9ARCH)

HSP 1 Score: 59.7 bits (143), Expect = 2.070e-9
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYI 144
            HYW GTKLL  E+K+  G+L++V +G  ++RRERRQL+RT+TD+ R +
Sbjct:  127 HYWMGTKLLWSEIKITTGILKRVLQGHGITRRERRQLLRTTTDIFRLV 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: M5BIY4_THACB (MDM38 protein n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BIY4_THACB)

HSP 1 Score: 59.3 bits (142), Expect = 2.150e-9
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYI 144
            HYW G+KLLA EV++   LLRKV  G  L+RRERRQL RT+ DLLR I
Sbjct:  107 HYWDGSKLLAAEVRISSKLLRKVLNGARLTRRERRQLTRTTNDLLRLI 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A6A7G3Z1_9CRUS (LETM1 and EF-hand domain-containing protein 1 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3Z1_9CRUS)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYIALSL 156
            HYW G +LL  +V   VGLLR+VT G+ LSRRER+QL+RT+TDL R +  ++
Sbjct:  135 HYWHGLRLLGSDVYTGVGLLRQVTTGRTLSRRERKQLLRTTTDLFRLVPFAM 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A5N5QUT6_9AGAM (Mitochondrial proton/calcium exchanger protein n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QUT6_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-9
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYI 144
            HYW G+KLLA EV+V   LLRKV  G  L+RRERRQL RT+ DLLR I
Sbjct:  138 HYWDGSKLLAAEVRVSSKLLRKVLNGARLTRRERRQLTRTTNDLLRLI 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A0K6FVV3_9AGAM (Mitochondrial proton/calcium exchanger protein n=12 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FVV3_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-9
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYI 144
            HYW G+KLLA EV+V   LLRKV  G  L+RRERRQL RT+ DLLR I
Sbjct:  155 HYWDGSKLLAAEVRVSSKLLRKVLNGARLTRRERRQLTRTTNDLLRLI 202
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A0K3CEH2_RHOTO (Mitochondrial proton/calcium exchanger protein n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CEH2_RHOTO)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-9
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYIALS 153
            HYW GTKLL  E+++   L+R++  GK+L+RRE RQL RT+TDLLR I  S
Sbjct:  137 HYWHGTKLLGKEIRISARLVRRLVAGKKLTRREHRQLKRTTTDLLRLIPFS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Match: A0A8J5QKY7_9ASCO (LETM1 domain-containing protein n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5QKY7_9ASCO)

HSP 1 Score: 58.2 bits (139), Expect = 4.870e-9
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYIALSL 156
            HYWAGTKLL +E+KV   LL K+  G ELSRRE  QL RT  D++R +  S+
Sbjct:   90 HYWAGTKLLGYEIKVSTKLLLKLMAGYELSRRESNQLQRTIVDVMRLVPFSM 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124614.5005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001905F5E23.640e-1062.75LETM1-like protein-domain-containing protein n=1 T... [more]
A0A8H3YG18_9TREE3.650e-1062.75Mitochondrial proton/calcium exchanger protein n=1... [more]
A0A8H8ILZ3_9AGAM9.310e-1068.75Mitochondrial proton/calcium exchanger protein n=3... [more]
A0A482T0K9_9ARCH2.070e-954.17LETM1 domain-containing protein n=1 Tax=archaeon T... [more]
M5BIY4_THACB2.150e-964.58MDM38 protein n=1 Tax=Thanatephorus cucumeris (str... [more]
A0A6A7G3Z1_9CRUS2.380e-955.77LETM1 and EF-hand domain-containing protein 1 (Fra... [more]
A0A5N5QUT6_9AGAM4.450e-966.67Mitochondrial proton/calcium exchanger protein n=1... [more]
A0A0K6FVV3_9AGAM4.450e-966.67Mitochondrial proton/calcium exchanger protein n=1... [more]
A0A0K3CEH2_RHOTO4.450e-956.86Mitochondrial proton/calcium exchanger protein n=4... [more]
A0A8J5QKY7_9ASCO4.870e-955.77LETM1 domain-containing protein n=1 Tax=[Candida] ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124614contigM-pyrifera_M_contig124614:36..191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog55529.EKX45792
Preferred nameLETM1
KEGG koko:K17800
KEGG TC2.A.97.1
KEGG Pathwayko04139,map04139
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001505,GO:0001666,GO:0003674,GO:0005215,GO:0005432,GO:0005451,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006816,GO:0006836,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007204,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015368,GO:0015369,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019725,GO:0019866,GO:0022607,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030003,GO:0030004,GO:0030007,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032502,GO:0032543,GO:0032879,GO:0032940,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0034214,GO:0034220,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0035725,GO:0036293,GO:0036294,GO:0042221,GO:0042407,GO:0042592,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045727,GO:0046872,GO:0046873,GO:0046903,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051139,GO:0051171,GO:0051173,GO:0051179,GO:0051204,GO:0051205,GO:0051209,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051282,GO:0051283,GO:0051480,GO:0051560,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055067,GO:0055074,GO:0055075,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0060401,GO:0060402,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0070129,GO:0070131,GO:0070482,GO:0070584,GO:0070585,GO:0070588,GO:0070727,GO:0070838,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071804,GO:0071805,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098916,GO:0099093,GO:0099516,GO:0099536,GO:0099537,GO:0099643,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1901660,GO:1902600,GO:1990542,GO:2000112
EggNOG free text desc.calcium export from the mitochondrion
EggNOG OGsKOG1043@1,KOG1043@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.5599856-CDS-M-pyrifera_M_contig124614:35..1911622815763.5599856-CDS-M-pyrifera_M_contig124614:35..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124614 36..191 -
1692277558.2558804-CDS-M-pyrifera_M_contig124614:35..1911692277558.2558804-CDS-M-pyrifera_M_contig124614:35..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124614 36..191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124614.5005.1prot_M-pyrifera_M_contig124614.5005.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124614 36..191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124614.5005.1

>prot_M-pyrifera_M_contig124614.5005.1 ID=prot_M-pyrifera_M_contig124614.5005.1|Name=mRNA_M-pyrifera_M_contig124614.5005.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
HYWAGTKLLAFEVKVWVGLLRKVTKGKELSRRERRQLMRTSTDLLRYIAL
SL
back to top

mRNA from alignment at M-pyrifera_M_contig124614:36..191-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124614.5005.1 ID=mRNA_M-pyrifera_M_contig124614.5005.1|Name=mRNA_M-pyrifera_M_contig124614.5005.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig124614:36..191- (Macrocystis pyrifera P11B4 male)
CACTACTGGGCGGGCACAAAGCTCTTAGCCTTCGAGGTGAAGGTGTGGGT
GGGCCTCCTCCGGAAGGTGACGAAGGGCAAGGAGCTCTCTCGCCGAGAGC
GCCGCCAGCTGATGCGAACCTCCACAGATCTGCTGAGGTACATAGCTCTC
TCCCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124614:36..191-

>mRNA_M-pyrifera_M_contig124614.5005.1 ID=mRNA_M-pyrifera_M_contig124614.5005.1|Name=mRNA_M-pyrifera_M_contig124614.5005.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig124614:36..191- (Macrocystis pyrifera P11B4 male)
CACTACTGGGCGGGCACAAAGCTCTTAGCCTTCGAGGTGAAGGTGTGGGT
GGGCCTCCTCCGGAAGGTGACGAAGGGCAAGGAGCTCTCTCGCCGAGAGC
GCCGCCAGCTGATGCGAACCTCCACAGATCTGCTGAGGTACATAGCTCTC
TCCCTCCACTACTGGGCGGGCACAAAGCTCTTAGCCTTCGAGGTGAAGGT
GTGGGTGGGCCTCCTCCGGAAGGTGACGAAGGGCAAGGAGCTCTCTCGCC
GAGAGCGCCGCCAGCTGATGCGAACCTCCACAGATCTGCTGAGGTACATA
GCTCTCTCCCTC
back to top