prot_M-pyrifera_M_contig124611.5002.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig124611.5002.1
Unique Nameprot_M-pyrifera_M_contig124611.5002.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length69
Homology
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: D8REH8_SELML (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8REH8_SELML)

HSP 1 Score: 94.4 bits (233), Expect = 2.360e-23
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    8 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            +++LVILRDGR LVGTL SFDQF+N VLE+A ER   G LY D+PLGLYI+RGENVVL+GE+
Sbjct:   20 KKLLVILRDGRKLVGTLRSFDQFANLVLEKAVERIIVGDLYCDLPLGLYIIRGENVVLVGEL 81          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A1Q3B097_CEPFO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B097_CEPFO)

HSP 1 Score: 93.6 bits (231), Expect = 3.240e-23
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 0
Query:    7 AERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            AE++L++LRDGR L+GTL SFDQF+N VLE A ER   G+LY DIPLGLY++RGENVVL+GE+
Sbjct:    5 AEKLLILLRDGRKLLGTLRSFDQFANAVLEGACERVIVGNLYCDIPLGLYVIRGENVVLIGEL 67          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: UPI001E8A74DB (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E8A74DB)

HSP 1 Score: 93.6 bits (231), Expect = 4.630e-23
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0
Query:    7 AERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            AE++LV+LRDGR L+GTL SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:   18 AEKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEL 80          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A5J4XUY8_9CHLO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XUY8_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 9.570e-23
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    8 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            +R+LV LRDGR LVG L SFDQF+N VLE+A ER   GSLYA++PLGLY+VRGENVVLLGE+
Sbjct:   20 KRLLVQLRDGRKLVGILRSFDQFANLVLEKAAERIIVGSLYAEVPLGLYVVRGENVVLLGEI 81          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: UPI001CF9BA86 (sm-like protein LSM1B isoform X5 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF9BA86)

HSP 1 Score: 92.4 bits (228), Expect = 1.010e-22
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    8 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            E++LV+LRDGR L+GTL SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:    9 EKLLVLLRDGRKLMGTLCSFDQFANAVLESACERVIVGDLYCDIPLGLYVIRGENVVLIGEL 70          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A6U0EZX5_9CHLO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A6U0EZX5_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 1.770e-22
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    8 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            +R+LV LRDG +++GTL SFDQF+N VLE A ER   GSLY+DIPLGLYIVRGENVVL+G++
Sbjct:   19 KRLLVALRDGSNIIGTLRSFDQFANIVLENAVERIIVGSLYSDIPLGLYIVRGENVVLMGDI 80          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A024U7H2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7H2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.870e-22
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    8 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            +++LV+LRDGRHLVG L SFDQFSN VLE   ER   G+ Y DIPLGLYI+RGEN+VL+GE+
Sbjct:   19 KQLLVVLRDGRHLVGMLRSFDQFSNIVLEGTCERHIVGNTYCDIPLGLYIIRGENIVLMGEL 80          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: UPI00126341B0 (sm-like protein LSM1B n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126341B0)

HSP 1 Score: 92.4 bits (228), Expect = 1.970e-22
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0
Query:    7 AERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            AE++LV+LRDGR L+G L SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:   33 AEKILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGEL 95          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A2P2LY27_RHIMU (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LY27_RHIMU)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-22
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0
Query:    6 AAERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            A+E++LV+LRDGR L+G L SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:    7 ASEKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEL 70          
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A1U7WIJ9_NICSY (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WIJ9_NICSY)

HSP 1 Score: 91.3 bits (225), Expect = 2.240e-22
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 0
Query:    8 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 69
            E++LV+LRDGR L+GTL SFDQF+N VLE A +R   G LY DIPLGLYI+RGENVVL+GE+
Sbjct:   19 EKLLVLLRDGRKLLGTLRSFDQFANAVLEGACDRVIVGDLYCDIPLGLYIIRGENVVLIGEL 80          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8REH8_SELML2.360e-2370.97U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=S... [more]
A0A1Q3B097_CEPFO3.240e-2368.25U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
UPI001E8A74DB4.630e-2369.84Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
A0A5J4XUY8_9CHLO9.570e-2372.58U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
UPI001CF9BA861.010e-2269.35sm-like protein LSM1B isoform X5 n=1 Tax=Mangifera... [more]
A0A6U0EZX5_9CHLO1.770e-2269.35U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=O... [more]
A0A024U7H2_9STRA1.870e-2267.74U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
UPI00126341B01.970e-2268.25sm-like protein LSM1B n=1 Tax=Pistacia vera TaxID=... [more]
A0A2P2LY27_RHIMU2.020e-2267.19U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=R... [more]
A0A1U7WIJ9_NICSY2.240e-2269.35U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=N... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..68
e-value: 3.7E-11
score: 53.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 8..67
e-value: 1.7E-16
score: 59.6
NoneNo IPR availableGENE3D2.30.30.100coord: 5..69
e-value: 1.4E-23
score: 85.0
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 8..69
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 8..69
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124611contigM-pyrifera_M_contig124611:65..340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124611.5002.1mRNA_M-pyrifera_M_contig124611.5002.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig124611 65..340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig124611.5002.1 ID=prot_M-pyrifera_M_contig124611.5002.1|Name=mRNA_M-pyrifera_M_contig124611.5002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
LTRTRAAERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYAD
IPLGLYIVRGENVVLLGEM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf