mRNA_M-pyrifera_M_contig124611.5002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124611.5002.1
Unique NamemRNA_M-pyrifera_M_contig124611.5002.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: D8REH8_SELML (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8REH8_SELML)

HSP 1 Score: 94.4 bits (233), Expect = 2.360e-23
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   22 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            +++LVILRDGR LVGTL SFDQF+N VLE+A ER   G LY D+PLGLYI+RGENVVL+GE+
Sbjct:   20 KKLLVILRDGRKLVGTLRSFDQFANLVLEKAVERIIVGDLYCDLPLGLYIIRGENVVLVGEL 81
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BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A1Q3B097_CEPFO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3B097_CEPFO)

HSP 1 Score: 93.6 bits (231), Expect = 3.240e-23
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   19 AERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            AE++L++LRDGR L+GTL SFDQF+N VLE A ER   G+LY DIPLGLY++RGENVVL+GE+
Sbjct:    5 AEKLLILLRDGRKLLGTLRSFDQFANAVLEGACERVIVGNLYCDIPLGLYVIRGENVVLIGEL 67
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BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: UPI001E8A74DB (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E8A74DB)

HSP 1 Score: 93.6 bits (231), Expect = 4.630e-23
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   19 AERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            AE++LV+LRDGR L+GTL SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:   18 AEKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEL 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A5J4XUY8_9CHLO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XUY8_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 9.570e-23
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   22 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            +R+LV LRDGR LVG L SFDQF+N VLE+A ER   GSLYA++PLGLY+VRGENVVLLGE+
Sbjct:   20 KRLLVQLRDGRKLVGILRSFDQFANLVLEKAAERIIVGSLYAEVPLGLYVVRGENVVLLGEI 81
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BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: UPI001CF9BA86 (sm-like protein LSM1B isoform X5 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF9BA86)

HSP 1 Score: 92.4 bits (228), Expect = 1.010e-22
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   22 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            E++LV+LRDGR L+GTL SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:    9 EKLLVLLRDGRKLMGTLCSFDQFANAVLESACERVIVGDLYCDIPLGLYVIRGENVVLIGEL 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A6U0EZX5_9CHLO (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A6U0EZX5_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 1.770e-22
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:   22 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            +R+LV LRDG +++GTL SFDQF+N VLE A ER   GSLY+DIPLGLYIVRGENVVL+G++
Sbjct:   19 KRLLVALRDGSNIIGTLRSFDQFANIVLENAVERIIVGSLYSDIPLGLYIVRGENVVLMGDI 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A024U7H2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7H2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.870e-22
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   22 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            +++LV+LRDGRHLVG L SFDQFSN VLE   ER   G+ Y DIPLGLYI+RGEN+VL+GE+
Sbjct:   19 KQLLVVLRDGRHLVGMLRSFDQFSNIVLEGTCERHIVGNTYCDIPLGLYIIRGENIVLMGEL 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: UPI00126341B0 (sm-like protein LSM1B n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126341B0)

HSP 1 Score: 92.4 bits (228), Expect = 1.970e-22
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   19 AERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            AE++LV+LRDGR L+G L SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:   33 AEKILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGEL 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A2P2LY27_RHIMU (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LY27_RHIMU)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-22
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   16 AAERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            A+E++LV+LRDGR L+G L SFDQF+N VLE A ER   G LY DIPLGLY++RGENVVL+GE+
Sbjct:    7 ASEKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEL 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Match: A0A1U7WIJ9_NICSY (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WIJ9_NICSY)

HSP 1 Score: 91.3 bits (225), Expect = 2.240e-22
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   22 ERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYADIPLGLYIVRGENVVLLGEM 207
            E++LV+LRDGR L+GTL SFDQF+N VLE A +R   G LY DIPLGLYI+RGENVVL+GE+
Sbjct:   19 EKLLVLLRDGRKLLGTLRSFDQFANAVLEGACDRVIVGDLYCDIPLGLYIIRGENVVLIGEL 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124611.5002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8REH8_SELML2.360e-2370.97U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=S... [more]
A0A1Q3B097_CEPFO3.240e-2368.25U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
UPI001E8A74DB4.630e-2369.84Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
A0A5J4XUY8_9CHLO9.570e-2372.58U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
UPI001CF9BA861.010e-2269.35sm-like protein LSM1B isoform X5 n=1 Tax=Mangifera... [more]
A0A6U0EZX5_9CHLO1.770e-2269.35U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=O... [more]
A0A024U7H2_9STRA1.870e-2267.74U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
UPI00126341B01.970e-2268.25sm-like protein LSM1B n=1 Tax=Pistacia vera TaxID=... [more]
A0A2P2LY27_RHIMU2.020e-2267.19U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=R... [more]
A0A1U7WIJ9_NICSY2.240e-2269.35U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124611contigM-pyrifera_M_contig124611:65..340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.1
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog88036.EFJ28168
KEGG koko:K12620
KEGG Pathwayko03018,map03018
KEGG ModuleM00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000290,GO:0000339,GO:0000932,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009892,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0032991,GO:0034518,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042538,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
EggNOG free text desc.U6 snRNA-associated Sm-like protein
EggNOG OGs37TT1@33090,3GHZI@35493,KOG1782@1,KOG1782@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.4258018-CDS-M-pyrifera_M_contig124611:64..1551622815763.4258018-CDS-M-pyrifera_M_contig124611:64..155Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124611 65..155 +
1692277558.1995726-CDS-M-pyrifera_M_contig124611:64..1551692277558.1995726-CDS-M-pyrifera_M_contig124611:64..155Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124611 65..155 +
1622815763.4373474-CDS-M-pyrifera_M_contig124611:224..3401622815763.4373474-CDS-M-pyrifera_M_contig124611:224..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124611 225..340 +
1692277558.20972-CDS-M-pyrifera_M_contig124611:224..3401692277558.20972-CDS-M-pyrifera_M_contig124611:224..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124611 225..340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124611.5002.1prot_M-pyrifera_M_contig124611.5002.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124611 65..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124611.5002.1

>prot_M-pyrifera_M_contig124611.5002.1 ID=prot_M-pyrifera_M_contig124611.5002.1|Name=mRNA_M-pyrifera_M_contig124611.5002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
LTRTRAAERVLVILRDGRHLVGTLSSFDQFSNFVLERAFERSYAGSLYAD
IPLGLYIVRGENVVLLGEM
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mRNA from alignment at M-pyrifera_M_contig124611:65..340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124611.5002.1 ID=mRNA_M-pyrifera_M_contig124611.5002.1|Name=mRNA_M-pyrifera_M_contig124611.5002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig124611:65..340+ (Macrocystis pyrifera P11B4 male)
CTGACGCGCACACGCGCTGCAGAACGGGTTCTCGTTATTCTGCGTGACGG
TCGCCACCTGGTAGGGACACTTAGCAGCTTCGACCAGTTCTGTACGTCTT
TTCATTTCATATGTAAGCCACATAGACGCTCACTCGCCGCCTCTCCTACC
CATTCTGCAGCCAACTTTGTGTTGGAACGCGCGTTTGAGCGTAGCTATGC
GGGTAGCCTGTATGCCGACATCCCTCTAGGTCTGTACATTGTGCGCGGGG
AGAACGTGGTGCTGCTGGGAGAAATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124611:65..340+

>mRNA_M-pyrifera_M_contig124611.5002.1 ID=mRNA_M-pyrifera_M_contig124611.5002.1|Name=mRNA_M-pyrifera_M_contig124611.5002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig124611:65..340+ (Macrocystis pyrifera P11B4 male)
CTGACGCGCACACGCGCTGCAGAACGGGTTCTCGTTATTCTGCGTGACGG
TCGCCACCTGGTAGGGACACTTAGCAGCTTCGACCAGTTCTCTGACGCGC
ACACGCGCTGCAGAACGGGTTCTCGTTATTCTGCGTGACGGTCGCCACCT
GGTAGGGACACTTAGCAGCTTCGACCAGTTCTCCAACTTTGTGTTGGAAC
GCGCGTTTGAGCGTAGCTATGCGGGTAGCCTGTATGCCGACATCCCTCTA
GGTCTGTACATTGTGCGCGGGGAGAACGTGGTGCTGCTGGGAGAAATGCC
AACTTTGTGTTGGAACGCGCGTTTGAGCGTAGCTATGCGGGTAGCCTGTA
TGCCGACATCCCTCTAGGTCTGTACATTGTGCGCGGGGAGAACGTGGTGC
TGCTGGGAGAAATG
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