mRNA_M-pyrifera_M_contig124610.5001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124610.5001.1
Unique NamemRNA_M-pyrifera_M_contig124610.5001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124610.5001.1 vs. uniprot
Match: A0A352VJI7_9BACT (Hpt domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A352VJI7_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.440e-6
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  139 DTKNAELHAHSIKSSAANVGAVAVQRRGKLLQEAAAAGNFEQILTLLPGVEEAYEEAVLEL 321
            D   AE  AHS+KSS ANVGA  V+     ++ A ++G+ E + T+LPG+++AY +A+ +L
Sbjct:   39 DPDEAEKGAHSLKSSPANVGAEVVRGLAGEIESAVSSGDVEAVRTILPGLKDAYSQAIADL 99
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BLAST of mRNA_M-pyrifera_M_contig124610.5001.1 vs. uniprot
Match: A0A800JZV2_9BACT (Hpt domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A800JZV2_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.730e-6
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   67 ELLELFQQEFVKNRGLLLESCKKKDTKNAELHAHSIKSSAANVGAVAVQRRGKLLQEAAAAGNFEQILTLLPGVEEAYEEAVLELG 324
            E+++LF          +L +    D    E  AHS+KSSAANVGA+ VQ     L+ AA+ G+ E+   L+P +E+AY +A  EL 
Sbjct:    4 EIVKLFLDHGPSRMEQILSAVDGSDLDVPERGAHSLKSSAANVGALHVQAATSELELAASDGDLERFRGLIPDLEQAYAQAAKELA 89
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BLAST of mRNA_M-pyrifera_M_contig124610.5001.1 vs. uniprot
Match: A0A651HBD6_9BACT (Hpt domain-containing protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651HBD6_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.920e-5
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  139 DTKNAELHAHSIKSSAANVGAVAVQRRGKLLQEAAAAGNFEQILTLLPGVEEAYEEAVLELGK 327
            D +  E  AH++KSSAANVG VA+Q     L+ AAA+G++ ++  +LP     + + + ELG+
Sbjct:   53 DLQRIERGAHALKSSAANVGGVALQHLASRLEAAAASGDWSEVNIILPPFRACFHDTLRELGE 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124610.5001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A352VJI7_9BACT4.440e-642.62Hpt domain-containing protein n=1 Tax=Gemmatimonad... [more]
A0A800JZV2_9BACT4.730e-638.37Hpt domain-containing protein n=1 Tax=Gemmatimonad... [more]
A0A651HBD6_9BACT4.920e-539.68Hpt domain-containing protein n=1 Tax=Gemmatimonad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124610contigM-pyrifera_M_contig124610:101..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.3876188-CDS-M-pyrifera_M_contig124610:100..4451622815763.3876188-CDS-M-pyrifera_M_contig124610:100..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124610 101..445 +
1692277558.1898596-CDS-M-pyrifera_M_contig124610:100..4451692277558.1898596-CDS-M-pyrifera_M_contig124610:100..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124610 101..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124610.5001.1prot_M-pyrifera_M_contig124610.5001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124610 101..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124610.5001.1

>prot_M-pyrifera_M_contig124610.5001.1 ID=prot_M-pyrifera_M_contig124610.5001.1|Name=mRNA_M-pyrifera_M_contig124610.5001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MPECLSVGHLLETVGEDAEFFGELLELFQQEFVKNRGLLLESCKKKDTKN
AELHAHSIKSSAANVGAVAVQRRGKLLQEAAAAGNFEQILTLLPGVEEAY
EEAVLELGKWIKPL*
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mRNA from alignment at M-pyrifera_M_contig124610:101..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124610.5001.1 ID=mRNA_M-pyrifera_M_contig124610.5001.1|Name=mRNA_M-pyrifera_M_contig124610.5001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig124610:101..445+ (Macrocystis pyrifera P11B4 male)
ATGCCGGAATGTTTGAGCGTTGGGCACTTGTTGGAGACGGTGGGTGAGGA
CGCGGAGTTCTTCGGAGAGCTGCTGGAGCTGTTCCAGCAGGAGTTCGTCA
AGAACCGTGGGCTGCTTCTAGAGAGTTGCAAGAAGAAGGACACAAAGAAT
GCGGAGCTCCACGCACACAGCATCAAGAGCAGCGCGGCCAACGTCGGTGC
AGTGGCCGTGCAGAGGCGTGGCAAGCTGCTGCAGGAGGCAGCCGCTGCAG
GCAACTTTGAACAGATCCTCACACTGCTGCCGGGTGTGGAGGAGGCCTAC
GAGGAGGCTGTGCTGGAGCTCGGCAAGTGGATCAAGCCTCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124610:101..445+

>mRNA_M-pyrifera_M_contig124610.5001.1 ID=mRNA_M-pyrifera_M_contig124610.5001.1|Name=mRNA_M-pyrifera_M_contig124610.5001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig124610:101..445+ (Macrocystis pyrifera P11B4 male)
ATGCCGGAATGTTTGAGCGTTGGGCACTTGTTGGAGACGGTGGGTGAGGA
CGCGGAGTTCTTCGGAGAGCTGCTGGAGCTGTTCCAGCAGGAGTTCGTCA
AGAACCGTGGGCTGCTTCTAGAGAGTTGCAAGAAGAAGGACACAAAGAAT
GCGGAGCTCCACGCACACAGCATCAAGAGCAGCGCGGCCAACGTCGGTGC
AGTGGCCGTGCAGAGGCGTGGCAAGCTGCTGCAGGAGGCAGCCGCTGCAG
GCAACTTTGAACAGATCCTCACACTGCTGCCGGGTGTGGAGGAGGCCTAC
GAGGAGGCTGTGCTGGAGCTCGGCAAGTGGATCAAGCCTCTCTGAATGCC
GGAATGTTTGAGCGTTGGGCACTTGTTGGAGACGGTGGGTGAGGACGCGG
AGTTCTTCGGAGAGCTGCTGGAGCTGTTCCAGCAGGAGTTCGTCAAGAAC
CGTGGGCTGCTTCTAGAGAGTTGCAAGAAGAAGGACACAAAGAATGCGGA
GCTCCACGCACACAGCATCAAGAGCAGCGCGGCCAACGTCGGTGCAGTGG
CCGTGCAGAGGCGTGGCAAGCTGCTGCAGGAGGCAGCCGCTGCAGGCAAC
TTTGAACAGATCCTCACACTGCTGCCGGGTGTGGAGGAGGCCTACGAGGA
GGCTGTGCTGGAGCTCGGCAAGTGGATCAAGCCTCTCTGA
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