prot_M-pyrifera_M_contig99741.22923.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig99741.22923.1
Unique Nameprot_M-pyrifera_M_contig99741.22923.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length111
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99741.22923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 17..54
e-value: 1.1E-4
score: 31.6
coord: 65..103
e-value: 0.77
score: 17.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 19..54
e-value: 2.2E-4
score: 21.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..109
e-value: 1.6E-18
score: 68.5
NoneNo IPR availablePANTHERPTHR44489:SF1WD REPEAT DOMAIN 86coord: 5..106
NoneNo IPR availablePANTHERPTHR44489FAMILY NOT NAMEDcoord: 5..106
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 41..55
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..111
score: 13.185
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99741contigM-pyrifera_M_contig99741:158..490 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99741.22923.1mRNA_M-pyrifera_M_contig99741.22923.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig99741 155..490 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig99741.22923.1 ID=prot_M-pyrifera_M_contig99741.22923.1|Name=mRNA_M-pyrifera_M_contig99741.22923.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MYCGCSDGRIVVYSGSEGEEVLSFHGHGKAVTGLEISDSCLWSCSEDGTV
CTWNIACDPSGGSPSNSLVSKSDHHGDRVVGLVNVQDRFVLSYSSDGTLL
VWDAAEAVPVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf