prot_M-pyrifera_M_contig98939.22756.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig98939.22756.1
Unique Nameprot_M-pyrifera_M_contig98939.22756.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length40
Homology
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: D7FLR7_ECTSI (Histone hairpin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.050e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 LKFASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
            LKFASDREEDPHRIAQRQKQID+GKNT+GYDRY + VP
Sbjct:  911 LKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVP 948          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: A0A662XJP5_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJP5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.880e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A ++E DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   92 LADEKETDPHRLAQRQKQIDYGKNTLGYDRYCAQVP 127          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: A0A421FLB8_9STRA (SLBP_RNA_bind domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FLB8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-9
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A ++E DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   29 LADEKEADPHRLAQRQKQIDYGKNTIGYDRYCAQVP 64          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: G5A233_PHYSP (SLBP_RNA_bind domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A233_PHYSP)

HSP 1 Score: 58.9 bits (141), Expect = 2.180e-9
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A ++E DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   47 LADEKETDPHRLAQRQKQIDYGKNTIGYDRYCAQVP 82          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: A0A8K1CNZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNZ8_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 2.830e-9
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0
Query:    5 SDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
            ++RE DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   45 TERETDPHRLAQRQKQIDYGKNTLGYDRYCAQVP 78          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: W2JZB1_PHYPR (SLBP_RNA_bind domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2JZB1_PHYPR)

HSP 1 Score: 58.9 bits (141), Expect = 2.970e-9
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A ++E DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   80 LADEKETDPHRLAQRQKQIDYGKNTIGYDRYCAQVP 115          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: A0A225WRR9_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WRR9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.000e-9
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A  +E DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   60 LADKKETDPHRLAQRQKQIDYGKNTIGYDRYCAQVP 95          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: M4B5M8_HYAAE (SLBP_RNA_bind domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B5M8_HYAAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.400e-9
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             + ++E DPHR+AQRQKQIDYGKNT GYDRY +QVP
Sbjct:   48 LSDEKETDPHRLAQRQKQIDYGKNTIGYDRYCAQVP 83          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: A0A3F2S136_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S136_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.010e-9
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A ++E DPHR+ QRQKQIDYGKNT GYDRY +QVP
Sbjct:   29 LADEKEADPHRLTQRQKQIDYGKNTIGYDRYCAQVP 64          
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Match: D0NCY1_PHYIT (SLBP_RNA_bind domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCY1_PHYIT)

HSP 1 Score: 57.0 bits (136), Expect = 8.370e-9
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 FASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVP 38
             A ++E DPHR+AQRQKQIDYGKNT GYD Y +QVP
Sbjct:   31 LADEKETDPHRLAQRQKQIDYGKNTIGYDHYCAQVP 66          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98939.22756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLR7_ECTSI1.050e-1286.84Histone hairpin binding protein n=1 Tax=Ectocarpus... [more]
A0A662XJP5_9STRA5.880e-1075.00SLBP_RNA_bind domain-containing protein n=1 Tax=No... [more]
A0A421FLB8_9STRA1.120e-975.00SLBP_RNA_bind domain-containing protein n=2 Tax=Ph... [more]
G5A233_PHYSP2.180e-975.00SLBP_RNA_bind domain-containing protein n=1 Tax=Ph... [more]
A0A8K1CNZ8_PYTOL2.830e-979.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2JZB1_PHYPR2.970e-975.00SLBP_RNA_bind domain-containing protein n=8 Tax=Ph... [more]
A0A225WRR9_9STRA6.000e-975.00SLBP_RNA_bind domain-containing protein n=1 Tax=Ph... [more]
M4B5M8_HYAAE6.400e-972.22SLBP_RNA_bind domain-containing protein n=1 Tax=Hy... [more]
A0A3F2S136_9STRA7.010e-972.22SLBP_RNA_bind domain-containing protein n=1 Tax=Ph... [more]
D0NCY1_PHYIT8.370e-972.22SLBP_RNA_bind domain-containing protein n=2 Tax=Ph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038294SLBP, RNA-binding domain superfamilyGENE3D1.10.8.1120coord: 3..39
e-value: 1.2E-12
score: 49.7
IPR029344Histone RNA hairpin-binding protein, RNA-binding domainPFAMPF15247SLBP_RNA_bindcoord: 9..38
e-value: 7.8E-12
score: 45.2
IPR026502Histone RNA stem-loop-binding protein SLBP1/SLBP2PANTHERPTHR17408HISTONE RNA HAIRPIN-BINDING PROTEINcoord: 5..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98939contigM-pyrifera_M_contig98939:486..605 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98939.22756.1mRNA_M-pyrifera_M_contig98939.22756.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig98939 486..605 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig98939.22756.1 ID=prot_M-pyrifera_M_contig98939.22756.1|Name=mRNA_M-pyrifera_M_contig98939.22756.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
LKFASDREEDPHRIAQRQKQIDYGKNTTGYDRYKSQVPM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038294SLBP_RNA_bind_sf
IPR029344SLBP_RNA_bind
IPR026502SLBP1/SLBP2