prot_M-pyrifera_M_contig96653.22257.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig96653.22257.1
Unique Nameprot_M-pyrifera_M_contig96653.22257.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length91
Homology
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI000A2A645D (probable RNA-binding protein 18 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A645D)

HSP 1 Score: 93.2 bits (230), Expect = 9.250e-22
Identity = 41/91 (45.05%), Postives = 68/91 (74.73%), Query Frame = 0
Query:    1 SVVAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESET 91
            +++ HR+++GN+DKR++EY ++++ + FG I   ++ + T+GP KG P GYCFVE+ +R EA  A++GLNGK+   RAL V +A+E +S+T
Sbjct:   16 NIIQHRLWVGNIDKRLSEYNLLKILQKFGEIKYFEYLFHTSGPLKGEPRGYCFVEYXTREEALKALQGLNGKMALSRALAVHWAKEDQSKT 106          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A6P8IAM5_ACTTE (Probable RNA-binding protein 18 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IAM5_ACTTE)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-20
Identity = 38/86 (44.19%), Postives = 65/86 (75.58%), Query Frame = 0
Query:    3 VAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQE 88
            V+HR+++GN+DKR++EY ++++ + FG + Q ++ + T+GPHKG P GYCFV++ S++EA  A++ LNGK+   RAL V +A + +
Sbjct:   20 VSHRLWMGNIDKRLSEYNLLKIVQRFGQVKQFEYLFHTSGPHKGEPRGYCFVQYESKQEATKAMKALNGKMALSRALVVRWANDDQ 105          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A6I9R801_ELAGV (probable RNA-binding protein 18 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R801_ELAGV)

HSP 1 Score: 88.6 bits (218), Expect = 2.380e-20
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0
Query:    6 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 87
            R++IGN+D+R+TE  V+++  PFG IV E F W T GP +G P GY F+++S++ EA+ A   +NGK+  GR L V FA E+
Sbjct:   15 RLYIGNLDQRITEANVIKMFSPFGKIVSEDFLWHTRGPKRGEPRGYAFIQYSTKEEAQLAKAKMNGKLACGRPLVVRFASER 96          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI00109F2394 (probable RNA-binding protein 18 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F2394)

HSP 1 Score: 88.6 bits (218), Expect = 2.690e-20
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 0
Query:    6 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 87
            R+++GN+D+R+TE  V+++  PFG I+ E F W T GP KG P GY F+++SS+ EA+ A   +NG++  GR L V FA E+
Sbjct:    9 RLYVGNLDQRITEANVIKIFSPFGKIISEDFLWHTRGPKKGEPRGYVFIQYSSKEEAQLAKTEMNGRLAYGRPLVVRFASEK 90          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A9NM68_PICSI (RRM domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NM68_PICSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.430e-20
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0
Query:    5 HRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFARE 86
            +R+++GN+D R+TEYQV+++  PFG I  E+F W   GP KG P G+ F+EFS R EAE A   +NG+   GR L V F  E
Sbjct:   25 NRLYVGNLDHRITEYQVIKMFSPFGKICFEEFMWHRHGPRKGEPRGFAFIEFSKREEAEKAKESMNGRFALGRPLVVRFVDE 106          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A176VG38_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VG38_MARPO)

HSP 1 Score: 88.2 bits (217), Expect = 5.970e-20
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    5 HRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 87
            H+++IGN+D RVTEY V++L  PFG I  E++ W T GP +G P G+ FVE+S R +AE A   +NG++  GR L V F  E+
Sbjct:   20 HKLYIGNLDHRVTEYHVIKLFSPFGKIRCEEYMWHTHGPKRGEPRGFAFVEYSKREDAERAKASMNGRLAFGRPLVVRFVDEK 102          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A7J7MRT9_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MRT9_9MAGN)

HSP 1 Score: 86.3 bits (212), Expect = 1.910e-19
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    6 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 87
            R++IGN+D R+TE  ++++  PFG IV E F W T GP +G P G+ F++FS++ EAE A   +NGK+  GR L V F+ E+
Sbjct:   14 RLYIGNLDHRITEEVLIKMFSPFGKIVSEDFLWHTRGPKRGQPRGFAFIQFSNKEEAEVAKEKMNGKLACGRPLIVRFSSEK 95          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A5P1E1V7_ASPOF (RRM domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E1V7_ASPOF)

HSP 1 Score: 86.3 bits (212), Expect = 2.480e-19
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    6 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 87
            R+++GN+D R+TE  V+++  PFG IV E F W T GP +G P GY F+E+S++ EA+ A   +NG++  GR L V FA E+
Sbjct:   15 RLYVGNLDHRITEAHVLRVFSPFGKIVSEDFLWHTRGPKRGEPRGYAFIEYSTKEEAQLAKTKMNGRLACGRPLVVRFASEK 96          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: A0A0D2VPW0_CAPO3 (RRM domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPW0_CAPO3)

HSP 1 Score: 86.7 bits (213), Expect = 2.480e-19
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0
Query:    3 VAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESE 90
            +++R+FIGN+D R+TEY ++Q+ + +    +  F W  AGP +G P  YCFVEF++   A  AV  LNGK+  GRALRV+ A+E+  +
Sbjct:    1 MSYRLFIGNLDARLTEYHLLQMLQRYEGFTKLHFLWHAAGPKRGEPRDYCFVEFATAETANRAVEQLNGKLALGRALRVSIAKEKAED 88          
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Match: UPI0009E565DD (probable RNA-binding protein 18 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E565DD)

HSP 1 Score: 85.9 bits (211), Expect = 2.900e-19
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    6 RIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAGYCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQ 87
            ++++GN+D+R+TE  V+++  PFG I+ E F W T GP KG P GY F+++ S+ EA+ A   +NGK+  GR L V +A E+
Sbjct:    9 KLYVGNLDQRITEANVIKMFSPFGKIISEDFLWHTRGPKKGEPRGYAFIQYGSKEEAQLAKTEMNGKLAYGRPLVVRYADEK 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig96653.22257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A645D9.250e-2245.05probable RNA-binding protein 18 n=2 Tax=Exaiptasia... [more]
A0A6P8IAM5_ACTTE1.010e-2044.19Probable RNA-binding protein 18 n=1 Tax=Actinia te... [more]
A0A6I9R801_ELAGV2.380e-2047.56probable RNA-binding protein 18 isoform X1 n=3 Tax... [more]
UPI00109F23942.690e-2046.34probable RNA-binding protein 18 n=1 Tax=Dendrobium... [more]
A9NM68_PICSI3.430e-2048.78RRM domain-containing protein n=1 Tax=Picea sitche... [more]
A0A176VG38_MARPO5.970e-2048.19RRM domain-containing protein n=2 Tax=Marchantia p... [more]
A0A7J7MRT9_9MAGN1.910e-1946.34RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A5P1E1V7_ASPOF2.480e-1946.34RRM domain-containing protein n=2 Tax=Asparagus of... [more]
A0A0D2VPW0_CAPO32.480e-1944.32RRM domain-containing protein n=1 Tax=Capsaspora o... [more]
UPI0009E565DD2.900e-1943.90probable RNA-binding protein 18 n=1 Tax=Phalaenops... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 6..82
e-value: 4.6E-18
score: 76.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..80
e-value: 3.5E-16
score: 58.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 5..86
score: 15.818
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..91
e-value: 2.7E-21
score: 77.9
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 7..89
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 7..89
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig96653contigM-pyrifera_M_contig96653:97..701 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig96653.22257.1mRNA_M-pyrifera_M_contig96653.22257.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig96653 97..701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig96653.22257.1 ID=prot_M-pyrifera_M_contig96653.22257.1|Name=mRNA_M-pyrifera_M_contig96653.22257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
SVVAHRIFIGNMDKRVTEYQVVQLCRPFGSIVQEQFCWTTAGPHKGTPAG
YCFVEFSSRREAEAAVRGLNGKVVGGRALRVAFAREQESET
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf