prot_M-pyrifera_M_contig9596.22125.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9596.22125.1
Unique Nameprot_M-pyrifera_M_contig9596.22125.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length329
Homology
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BLAST of mRNA_M-pyrifera_M_contig9596.22125.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 1.080e-135
Identity = 219/333 (65.77%), Postives = 246/333 (73.87%), Query Frame = 0 
Query:   10 QSHAGPLVALAGTLEKLSRLKVLDLSRCALIGLAGHRYRGLIALGNAFAGRSNRLTHLRLSENSLHSEAALIVGGWLPSLSKLRYLEMSGRAGFDPLCGGFRTLLHLRMLVLRDIGADDGEAESVAAFVTSSARVESLDLSQNQIHVRGARQLAEAIRCNGSLVSXXXXXXXXXXXXXXXXXXXXXHSPSLAELDVSSNGLTIG-------------IKEPFVKAALASLKIETFGLSGNDISPSDAEDIQEYASANVELRAVADAPESYDLWKASSIVEACLVAKLDCLPEGVARALKENATFVGEEGPMRQAVLAACPPTKAELLKTNPGA 329
            Q + GPLVALA TL  LSRLKVLDLS C LIGLAG+RY GL ALGN FA    +LTHLR+S NSLHSEAALIVGGWLPSL KLRYL++S R+GFD LCG FRT LHLR L+LRD+G DDGEAE VA+F+  SAR+E LDLS NQ+HVRGAR LA A+R NGSL S                     H+ SL ELDVSSNGLT G             +KE F++AALAS  IETF LSGNDI PSD E++Q YAS+NVELRAVADAPESYDLW+AS IVE CLVAK D LP GVA ALK+N TF+ EEGPMR+AVLAA P TK ELL+ +PGA
Sbjct:   27 QRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLAGNRYHGLNALGNTFAS-GKKLTHLRISGNSLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDSLCGAFRTSLHLRTLLLRDVGMDDGEAEGVASFLALSARLEKLDLSDNQLHVRGARYLAGALRSNGSLSSLLLGHNRIGNEGALLLAASVPHAASLVELDVSSNGLTGGXXXXXXXXYTKKSVKEGFIEAALASYSIETFRLSGNDIPPSDVEEMQGYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALKKNPTFIEEEGPMREAVLAASPLTKQELLRNSPGA 358
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BLAST of mRNA_M-pyrifera_M_contig9596.22125.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 2.590e-102
Identity = 181/326 (55.52%), Postives = 203/326 (62.27%), Query Frame = 0 
Query:    4 NPLGEVQSHAGPLVALAGTLEKLSRLKVLDLSRCALIGLAGHRYRGLIALGNAFAGRSNRLTHLRLSENSLHSEAALIVGGWLPSLSKLRYLEMSGRAGFDPLCGGFRTLLHLRMLVLRDIGADDGEAESVAAFVTSSARVESLDLSQNQIHVRGARQLAEAIRCNGSLVSXXXXXXXXXXXXXXXXXXXXXHSPSLAELDVSSNGLTIGIKEPFVKAALASLKIETFGLSGNDISPSDAEDIQEYASANVELRAVADAPESYDLWKASSIVEACLVAKLDCLPEGVARALKENATFVGEEGPMRQAVLAACPPTKAELLKTNPGA 329
            NPLGE Q + GPLVALA TL  LSRLKVLDLS C LIGL+G+RY GL ALGN  A    +LTHLR+S N LHSEAALIVGGWLPSL KLRYL++S R+GFDPLCG FRT LHLR L+LRD+G DD EAE VA+F+  S R+E LDLS+NQ                                                                               LSGNDI PSD E++QEYAS+NVELRAVADAPESYDLW+AS IVE CLVAK D LP GVA ALK+N TFV EEGPMR+AVLAA P TK ELL+ +PGA
Sbjct:   87 NPLGEEQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLAS-GKKLTHLRISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQER-----------------------------------------------------------------------------LSGNDIPPSDVEEMQEYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALKKNPTFVEEEGPMREAVLAASPLTKQELLRNSPGA 334
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9596.22125.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSY1_ECTSI1.080e-13565.77Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5LDS7_9PHAE2.590e-10255.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 197..225
e-value: 150.0
score: 1.7
coord: 141..168
e-value: 0.01
score: 25.0
coord: 26..59
e-value: 67.0
score: 4.3
coord: 169..196
e-value: 0.022
score: 23.9
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 16..99
coord: 116..258
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 17..249
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..261
e-value: 6.4E-40
score: 138.6
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 171..191
e-value: 0.24
score: 11.6
coord: 143..163
e-value: 0.38
score: 10.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9596contigM-pyrifera_M_contig9596:1792..8336 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9596.22125.1mRNA_M-pyrifera_M_contig9596.22125.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9596 1792..8336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9596.22125.1 ID=prot_M-pyrifera_M_contig9596.22125.1|Name=mRNA_M-pyrifera_M_contig9596.22125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=329bp
MSSNPLGEVQSHAGPLVALAGTLEKLSRLKVLDLSRCALIGLAGHRYRGL
IALGNAFAGRSNRLTHLRLSENSLHSEAALIVGGWLPSLSKLRYLEMSGR
AGFDPLCGGFRTLLHLRMLVLRDIGADDGEAESVAAFVTSSARVESLDLS
QNQIHVRGARQLAEAIRCNGSLVSLLLAHNLIGDEGAGLLATAIPHSPSL
AELDVSSNGLTIGIKEPFVKAALASLKIETFGLSGNDISPSDAEDIQEYA
SANVELRAVADAPESYDLWKASSIVEACLVAKLDCLPEGVARALKENATF
VGEEGPMRQAVLAACPPTKAELLKTNPGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt