mRNA_M-pyrifera_M_contig9596.22125.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig9596.22125.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 1.080e-135 Identity = 219/333 (65.77%), Postives = 246/333 (73.87%), Query Frame = 1
Query: 28 QSHAGPLVALAGTLEKLSRLKVLDLSRCALIGLAGHRYRGLIALGNAFAGRSNRLTHLRLSENSLHSEAALIVGGWLPSLSKLRYLEMSGRAGFDPLCGGFRTLLHLRMLVLRDIGADDGEAESVAAFVTSSARVESLDLSQNQIHVRGARQLAEAIRCNGSLVSXXXXXXXXXXXXXXXXXXXXXHSPSLAELDVSSNGLTIG-------------IKEPFVKAALASLKIETFGLSGNDISPSDAEDIQEYASANVELRAVADAPESYDLWKASSIVEACLVAKLDCLPEGVARALKENATFVGEEGPMRQAVLAACPPTKAELLKTNPGA 987
Q + GPLVALA TL LSRLKVLDLS C LIGLAG+RY GL ALGN FA +LTHLR+S NSLHSEAALIVGGWLPSL KLRYL++S R+GFD LCG FRT LHLR L+LRD+G DDGEAE VA+F+ SAR+E LDLS NQ+HVRGAR LA A+R NGSL S H+ SL ELDVSSNGLT G +KE F++AALAS IETF LSGNDI PSD E++Q YAS+NVELRAVADAPESYDLW+AS IVE CLVAK D LP GVA ALK+N TF+ EEGPMR+AVLAA P TK ELL+ +PGA
Sbjct: 27 QRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLAGNRYHGLNALGNTFAS-GKKLTHLRISGNSLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDSLCGAFRTSLHLRTLLLRDVGMDDGEAEGVASFLALSARLEKLDLSDNQLHVRGARYLAGALRSNGSLSSLLLGHNRIGNEGALLLAASVPHAASLVELDVSSNGLTGGXXXXXXXXYTKKSVKEGFIEAALASYSIETFRLSGNDIPPSDVEEMQGYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALKKNPTFIEEEGPMREAVLAASPLTKQELLRNSPGA 358
BLAST of mRNA_M-pyrifera_M_contig9596.22125.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE) HSP 1 Score: 313 bits (802), Expect = 2.590e-102 Identity = 181/326 (55.52%), Postives = 203/326 (62.27%), Query Frame = 1
Query: 10 NPLGEVQSHAGPLVALAGTLEKLSRLKVLDLSRCALIGLAGHRYRGLIALGNAFAGRSNRLTHLRLSENSLHSEAALIVGGWLPSLSKLRYLEMSGRAGFDPLCGGFRTLLHLRMLVLRDIGADDGEAESVAAFVTSSARVESLDLSQNQIHVRGARQLAEAIRCNGSLVSXXXXXXXXXXXXXXXXXXXXXHSPSLAELDVSSNGLTIGIKEPFVKAALASLKIETFGLSGNDISPSDAEDIQEYASANVELRAVADAPESYDLWKASSIVEACLVAKLDCLPEGVARALKENATFVGEEGPMRQAVLAACPPTKAELLKTNPGA 987
NPLGE Q + GPLVALA TL LSRLKVLDLS C LIGL+G+RY GL ALGN A +LTHLR+S N LHSEAALIVGGWLPSL KLRYL++S R+GFDPLCG FRT LHLR L+LRD+G DD EAE VA+F+ S R+E LDLS+NQ LSGNDI PSD E++QEYAS+NVELRAVADAPESYDLW+AS IVE CLVAK D LP GVA ALK+N TFV EEGPMR+AVLAA P TK ELL+ +PGA
Sbjct: 87 NPLGEEQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLAS-GKKLTHLRISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQER-----------------------------------------------------------------------------LSGNDIPPSDVEEMQEYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALKKNPTFVEEEGPMREAVLAASPLTKQELLRNSPGA 334 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9596.22125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig9596.22125.1 >prot_M-pyrifera_M_contig9596.22125.1 ID=prot_M-pyrifera_M_contig9596.22125.1|Name=mRNA_M-pyrifera_M_contig9596.22125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=329bp MSSNPLGEVQSHAGPLVALAGTLEKLSRLKVLDLSRCALIGLAGHRYRGLback to top mRNA from alignment at M-pyrifera_M_contig9596:1792..8336+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig9596.22125.1 ID=mRNA_M-pyrifera_M_contig9596.22125.1|Name=mRNA_M-pyrifera_M_contig9596.22125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6545bp|location=Sequence derived from alignment at M-pyrifera_M_contig9596:1792..8336+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig9596:1792..8336+ >mRNA_M-pyrifera_M_contig9596.22125.1 ID=mRNA_M-pyrifera_M_contig9596.22125.1|Name=mRNA_M-pyrifera_M_contig9596.22125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1974bp|location=Sequence derived from alignment at M-pyrifera_M_contig9596:1792..8336+ (Macrocystis pyrifera P11B4 male)back to top |