prot_M-pyrifera_M_contig95689.22061.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig95689.22061.1
Unique Nameprot_M-pyrifera_M_contig95689.22061.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length43
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig95689.22061.1 vs. uniprot
Match: A0A0W8DA93_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DA93_PHYNI)

HSP 1 Score: 67.8 bits (164), Expect = 4.190e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0 
Query:    2 VWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERI 40
            VWYNVGTLYD+CNQT+DA DAY KAAELGA   FI ER+
Sbjct:  133 VWYNVGTLYDTCNQTSDARDAYQKAAELGADAQFIRERL 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95689.22061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0W8DA93_PHYNI4.190e-1276.92Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..40
e-value: 2.6E-5
score: 26.0
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..33
score: 9.16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95689contigM-pyrifera_M_contig95689:259..387 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95689.22061.1mRNA_M-pyrifera_M_contig95689.22061.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig95689 259..387 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig95689.22061.1 ID=prot_M-pyrifera_M_contig95689.22061.1|Name=mRNA_M-pyrifera_M_contig95689.22061.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
QVWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERIAAL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom