mRNA_M-pyrifera_M_contig95689.22061.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95689.22061.1
Unique NamemRNA_M-pyrifera_M_contig95689.22061.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95689.22061.1 vs. uniprot
Match: A0A0W8DA93_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DA93_PHYNI)

HSP 1 Score: 67.8 bits (164), Expect = 4.190e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 VWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERI 120
            VWYNVGTLYD+CNQT+DA DAY KAAELGA   FI ER+
Sbjct:  133 VWYNVGTLYDTCNQTSDARDAYQKAAELGADAQFIRERL 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95689.22061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0W8DA93_PHYNI4.190e-1276.92Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95689contigM-pyrifera_M_contig95689:259..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816871.420719-CDS-M-pyrifera_M_contig95689:258..3871622816871.420719-CDS-M-pyrifera_M_contig95689:258..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95689 259..387 +
1692278227.6422133-CDS-M-pyrifera_M_contig95689:258..3871692278227.6422133-CDS-M-pyrifera_M_contig95689:258..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95689 259..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95689.22061.1prot_M-pyrifera_M_contig95689.22061.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95689 259..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95689.22061.1

>prot_M-pyrifera_M_contig95689.22061.1 ID=prot_M-pyrifera_M_contig95689.22061.1|Name=mRNA_M-pyrifera_M_contig95689.22061.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
QVWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERIAAL
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mRNA from alignment at M-pyrifera_M_contig95689:259..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95689.22061.1 ID=mRNA_M-pyrifera_M_contig95689.22061.1|Name=mRNA_M-pyrifera_M_contig95689.22061.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig95689:259..387+ (Macrocystis pyrifera P11B4 male)
CAGGTTTGGTACAACGTGGGCACCTTGTACGACAGCTGCAACCAGACGAC
GGACGCGCTCGACGCGTACAACAAGGCGGCAGAGCTGGGCGCCAGCGGAG
GCTTTATTCACGAGCGGATAGCCGCCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95689:259..387+

>mRNA_M-pyrifera_M_contig95689.22061.1 ID=mRNA_M-pyrifera_M_contig95689.22061.1|Name=mRNA_M-pyrifera_M_contig95689.22061.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig95689:259..387+ (Macrocystis pyrifera P11B4 male)
CAGGTTTGGTACAACGTGGGCACCTTGTACGACAGCTGCAACCAGACGAC
GGACGCGCTCGACGCGTACAACAAGGCGGCAGAGCTGGGCGCCAGCGGAG
GCTTTATTCACGAGCGGATAGCCGCCCTCCAGGTTTGGTACAACGTGGGC
ACCTTGTACGACAGCTGCAACCAGACGACGGACGCGCTCGACGCGTACAA
CAAGGCGGCAGAGCTGGGCGCCAGCGGAGGCTTTATTCACGAGCGGATAG
CCGCCCTC
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