prot_M-pyrifera_M_contig93285.21538.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig93285.21538.1
Unique Nameprot_M-pyrifera_M_contig93285.21538.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length61
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig93285.21538.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.550e-23
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:    1 REFNRYWWFRGDPSVYIHVEAKGGGTWGQYKSQEEADALRDSQQPRGKRGAPLRQRLCQ 59
            REFNRYWWF G PS  IHVE KGG  WGQY+SQ+E DAL DSQ PRGKRGAPLR+RLCQ
Sbjct:  698 REFNRYWWFGGGPSEVIHVEEKGGDVWGQYRSQQEVDALMDSQHPRGKRGAPLRRRLCQ 756
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93285.21538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK0_ECTSI1.550e-2377.97Nucleosome/chromatin assembly factor group n=1 Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028941WHIM2 domainPFAMPF15613WSDcoord: 1..59
e-value: 1.7E-6
score: 28.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93285contigM-pyrifera_M_contig93285:451..633 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93285.21538.1mRNA_M-pyrifera_M_contig93285.21538.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig93285 451..633 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig93285.21538.1 ID=prot_M-pyrifera_M_contig93285.21538.1|Name=mRNA_M-pyrifera_M_contig93285.21538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
REFNRYWWFRGDPSVYIHVEAKGGGTWGQYKSQEEADALRDSQQPRGKRG
APLRQRLCQV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028941WHIM2_dom