mRNA_M-pyrifera_M_contig93285.21538.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93285.21538.1
Unique NamemRNA_M-pyrifera_M_contig93285.21538.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93285.21538.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.550e-23
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 REFNRYWWFRGDPSVYIHVEAKGGGTWGQYKSQEEADALRDSQQPRGKRGAPLRQRLCQ 177
            REFNRYWWF G PS  IHVE KGG  WGQY+SQ+E DAL DSQ PRGKRGAPLR+RLCQ
Sbjct:  698 REFNRYWWFGGGPSEVIHVEEKGGDVWGQYRSQQEVDALMDSQHPRGKRGAPLRRRLCQ 756
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93285.21538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK0_ECTSI1.550e-2377.97Nucleosome/chromatin assembly factor group n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93285contigM-pyrifera_M_contig93285:451..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.8038583-CDS-M-pyrifera_M_contig93285:450..6331622816844.8038583-CDS-M-pyrifera_M_contig93285:450..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93285 451..633 +
1692278212.0637932-CDS-M-pyrifera_M_contig93285:450..6331692278212.0637932-CDS-M-pyrifera_M_contig93285:450..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93285 451..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93285.21538.1prot_M-pyrifera_M_contig93285.21538.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93285 451..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93285.21538.1

>prot_M-pyrifera_M_contig93285.21538.1 ID=prot_M-pyrifera_M_contig93285.21538.1|Name=mRNA_M-pyrifera_M_contig93285.21538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
REFNRYWWFRGDPSVYIHVEAKGGGTWGQYKSQEEADALRDSQQPRGKRG
APLRQRLCQV*
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mRNA from alignment at M-pyrifera_M_contig93285:451..633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93285.21538.1 ID=mRNA_M-pyrifera_M_contig93285.21538.1|Name=mRNA_M-pyrifera_M_contig93285.21538.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig93285:451..633+ (Macrocystis pyrifera P11B4 male)
AGGGAGTTCAACAGATACTGGTGGTTTCGGGGGGATCCGTCCGTATACAT
TCATGTTGAGGCAAAGGGCGGCGGTACCTGGGGGCAGTACAAGAGCCAGG
AAGAGGCCGATGCTCTTCGGGACAGCCAGCAACCGCGCGGGAAGAGGGGG
GCGCCGCTGCGGCAAAGGCTCTGCCAGGTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93285:451..633+

>mRNA_M-pyrifera_M_contig93285.21538.1 ID=mRNA_M-pyrifera_M_contig93285.21538.1|Name=mRNA_M-pyrifera_M_contig93285.21538.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig93285:451..633+ (Macrocystis pyrifera P11B4 male)
AGGGAGTTCAACAGATACTGGTGGTTTCGGGGGGATCCGTCCGTATACAT
TCATGTTGAGGCAAAGGGCGGCGGTACCTGGGGGCAGTACAAGAGCCAGG
AAGAGGCCGATGCTCTTCGGGACAGCCAGCAACCGCGCGGGAAGAGGGGG
GCGCCGCTGCGGCAAAGGCTCTGCCAGGTTTGAAGGGAGTTCAACAGATA
CTGGTGGTTTCGGGGGGATCCGTCCGTATACATTCATGTTGAGGCAAAGG
GCGGCGGTACCTGGGGGCAGTACAAGAGCCAGGAAGAGGCCGATGCTCTT
CGGGACAGCCAGCAACCGCGCGGGAAGAGGGGGGCGCCGCTGCGGCAAAG
GCTCTGCCAGGTTTGA
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