prot_M-pyrifera_M_contig92648.21438.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig92648.21438.1
Unique Nameprot_M-pyrifera_M_contig92648.21438.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length220
Homology
BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Match: A0A2R5G7P8_9STRA (Vigilin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7P8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.150e-5
Identity = 58/228 (25.44%), Postives = 97/228 (42.54%), Query Frame = 0
Query:   12 SLLSSGGEGINKLRTDTGAMIDLVLGEDSGT-----DGKRGRRGXXGGGG---------KQTTTKIQPTSATAVIVVSAQDEEKLQEAKQAVMDAIG----DFVTETLLVSGPAVAAIVGKKGATIQALQKDH-SVSIDIQQDETPKKGGRRSKEWVLETATVRIMGATEAVTEAAAKVQEIAD--ENQVKTVPIPDSDVIPTLLGAKGAALRELQTEHKVASIDIIR 218
            +L+  GG  + +LR +TGA ID+ L    G+     D    + G                Q   K Q       + ++ + +  L   K A+   +     D +    L     +A I+GKKGA+I+ +Q+ H +V I++Q+D                     I    +AV  A   + +I      +  ++P+P  + IP+L+G KGA +REL+    VA ID+ R
Sbjct:  602 NLIGKGGVTLRRLRKETGAQIDVSLDRRKGSNVTANDAPADKFGTIAAPSVKVNLERLESQHNVKFQVDETRGQVRIAGRSK-NLAAGKSALFALLRFSFPDQIVRVPLDDAAMIAHIIGKKGASIRKIQEAHPNVQINVQRDPC---------------CVELISSEADAVQAAQRAIGDIVQVWHRERMSIPVP-VEAIPSLIGKKGANIRELRAASGVAQIDVSR 812          
BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Match: A0A8B9RDR8_ASTMX (High density lipoprotein binding protein b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9RDR8_ASTMX)

HSP 1 Score: 53.9 bits (128), Expect = 7.680e-5
Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   64 QPTSATAVIVVSAQDEEKLQEAKQAVMDAIGDFVTE-----------TLLVSGPAVAAIVGKKGATIQALQKDHSVSIDIQQDETPKKGGRRSKEWVLETATVRIMGATEAVTEAAAKVQEIADENQVKTVPIPDSDVIPTLLGAKGAALRELQTEHKVASI 214
            QP   + VI ++ Q E  ++ A+QA++D + +   E           TL V       I+G+KGA I  ++KDH V++       P KG  +    V+      +  A  A+ +  A +QE+  ++ V+     D  V   ++GA+G A+R+L  E KV+++
Sbjct:  939 QPDQQSDVIKITGQ-EASVERARQALLDRVKELQAEQEDRALRSYKLTLSVDPKYHPKIIGRKGAVISQIRKDHDVNVQF-----PDKGDEQQDLIVIWGYERNVEEAKAAIEQMVAALQEMVSDD-VRL----DHRVHARIIGARGKAIRKLMEEFKVSTV 1089          
BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Match: A0A8B9KDS8_ASTMX (High density lipoprotein binding protein b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KDS8_ASTMX)

HSP 1 Score: 53.9 bits (128), Expect = 7.680e-5
Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   64 QPTSATAVIVVSAQDEEKLQEAKQAVMDAIGDFVTE-----------TLLVSGPAVAAIVGKKGATIQALQKDHSVSIDIQQDETPKKGGRRSKEWVLETATVRIMGATEAVTEAAAKVQEIADENQVKTVPIPDSDVIPTLLGAKGAALRELQTEHKVASI 214
            QP   + VI ++ Q E  ++ A+QA++D + +   E           TL V       I+G+KGA I  ++KDH V++       P KG  +    V+      +  A  A+ +  A +QE+  ++ V+     D  V   ++GA+G A+R+L  E KV+++
Sbjct:  936 QPDQQSDVIKITGQ-EASVERARQALLDRVKELQAEQEDRALRSYKLTLSVDPKYHPKIIGRKGAVISQIRKDHDVNVQF-----PDKGDEQQDLIVIWGYERNVEEAKAAIEQMVAALQEMVSDD-VRL----DHRVHARIIGARGKAIRKLMEEFKVSTV 1086          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2R5G7P8_9STRA3.150e-525.44Vigilin n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
A0A8B9RDR8_ASTMX7.680e-527.78High density lipoprotein binding protein b n=1 Tax... [more]
A0A8B9KDS8_ASTMX7.680e-527.78High density lipoprotein binding protein b n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 95..176
e-value: 1.1E-9
score: 48.1
coord: 1..94
e-value: 2.6
score: 12.0
NoneNo IPR availableGENE3D3.30.310.210coord: 1..183
e-value: 7.8E-15
score: 56.9
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 51..216
NoneNo IPR availablePANTHERPTHR10288:SF145P-ELEMENT SOMATIC INHIBITOR, ISOFORM Ccoord: 51..216
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 1..89
score: 9.351
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 96..171
score: 11.552
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 98..173
e-value: 3.2E-9
score: 36.5
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 94..186
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 12..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92648contigM-pyrifera_M_contig92648:2..739 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92648.21438.1mRNA_M-pyrifera_M_contig92648.21438.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig92648 2..739 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig92648.21438.1 ID=prot_M-pyrifera_M_contig92648.21438.1|Name=mRNA_M-pyrifera_M_contig92648.21438.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
LELEVPRPAALSLLSSGGEGINKLRTDTGAMIDLVLGEDSGTDGKRGRRG
RRGGGGKQTTTKIQPTSATAVIVVSAQDEEKLQEAKQAVMDAIGDFVTET
LLVSGPAVAAIVGKKGATIQALQKDHSVSIDIQQDETPKKGGRRSKEWVL
ETATVRIMGATEAVTEAAAKVQEIADENQVKTVPIPDSDVIPTLLGAKGA
ALRELQTEHKVASIDIIRGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf