mRNA_M-pyrifera_M_contig92648.21438.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92648.21438.1
Unique NamemRNA_M-pyrifera_M_contig92648.21438.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Match: A0A2R5G7P8_9STRA (Vigilin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7P8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.150e-5
Identity = 58/228 (25.44%), Postives = 97/228 (42.54%), Query Frame = 1 
Query:   34 SLLSSGGEGINKLRTDTGAMIDLVLGEDSGT-----DGKRGRRGXXGGGG---------KQTTTKIQPTSATAVIVVSAQDEEKLQEAKQAVMDAIG----DFVTETLLVSGPAVAAIVGKKGATIQALQKDH-SVSIDIQQDETPKKGGRRSKEWVLETATVRIMGATEAVTEAAAKVQEIAD--ENQVKTVPIPDSDVIPTLLGAKGAALRELQTEHKVASIDIIR 654
            +L+  GG  + +LR +TGA ID+ L    G+     D    + G                Q   K Q       + ++ + +  L   K A+   +     D +    L     +A I+GKKGA+I+ +Q+ H +V I++Q+D                     I    +AV  A   + +I      +  ++P+P  + IP+L+G KGA +REL+    VA ID+ R
Sbjct:  602 NLIGKGGVTLRRLRKETGAQIDVSLDRRKGSNVTANDAPADKFGTIAAPSVKVNLERLESQHNVKFQVDETRGQVRIAGRSK-NLAAGKSALFALLRFSFPDQIVRVPLDDAAMIAHIIGKKGASIRKIQEAHPNVQINVQRDPC---------------CVELISSEADAVQAAQRAIGDIVQVWHRERMSIPVP-VEAIPSLIGKKGANIRELRAASGVAQIDVSR 812
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BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Match: A0A8B9RDR8_ASTMX (High density lipoprotein binding protein b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9RDR8_ASTMX)

HSP 1 Score: 53.9 bits (128), Expect = 7.680e-5
Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 1 
Query:  190 QPTSATAVIVVSAQDEEKLQEAKQAVMDAIGDFVTE-----------TLLVSGPAVAAIVGKKGATIQALQKDHSVSIDIQQDETPKKGGRRSKEWVLETATVRIMGATEAVTEAAAKVQEIADENQVKTVPIPDSDVIPTLLGAKGAALRELQTEHKVASI 642
            QP   + VI ++ Q E  ++ A+QA++D + +   E           TL V       I+G+KGA I  ++KDH V++       P KG  +    V+      +  A  A+ +  A +QE+  ++ V+     D  V   ++GA+G A+R+L  E KV+++
Sbjct:  939 QPDQQSDVIKITGQ-EASVERARQALLDRVKELQAEQEDRALRSYKLTLSVDPKYHPKIIGRKGAVISQIRKDHDVNVQF-----PDKGDEQQDLIVIWGYERNVEEAKAAIEQMVAALQEMVSDD-VRL----DHRVHARIIGARGKAIRKLMEEFKVSTV 1089
[Close]
BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Match: A0A8B9KDS8_ASTMX (High density lipoprotein binding protein b n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KDS8_ASTMX)

HSP 1 Score: 53.9 bits (128), Expect = 7.680e-5
Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 1 
Query:  190 QPTSATAVIVVSAQDEEKLQEAKQAVMDAIGDFVTE-----------TLLVSGPAVAAIVGKKGATIQALQKDHSVSIDIQQDETPKKGGRRSKEWVLETATVRIMGATEAVTEAAAKVQEIADENQVKTVPIPDSDVIPTLLGAKGAALRELQTEHKVASI 642
            QP   + VI ++ Q E  ++ A+QA++D + +   E           TL V       I+G+KGA I  ++KDH V++       P KG  +    V+      +  A  A+ +  A +QE+  ++ V+     D  V   ++GA+G A+R+L  E KV+++
Sbjct:  936 QPDQQSDVIKITGQ-EASVERARQALLDRVKELQAEQEDRALRSYKLTLSVDPKYHPKIIGRKGAVISQIRKDHDVNVQF-----PDKGDEQQDLIVIWGYERNVEEAKAAIEQMVAALQEMVSDD-VRL----DHRVHARIIGARGKAIRKLMEEFKVSTV 1086
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92648.21438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2R5G7P8_9STRA3.150e-525.44Vigilin n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
A0A8B9RDR8_ASTMX7.680e-527.78High density lipoprotein binding protein b n=1 Tax... [more]
A0A8B9KDS8_ASTMX7.680e-527.78High density lipoprotein binding protein b n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92648contigM-pyrifera_M_contig92648:2..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.885758-CDS-M-pyrifera_M_contig92648:1..4221622816839.885758-CDS-M-pyrifera_M_contig92648:1..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92648 2..422 +
1692278209.141606-CDS-M-pyrifera_M_contig92648:1..4221692278209.141606-CDS-M-pyrifera_M_contig92648:1..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92648 2..422 +
1622816839.8999174-CDS-M-pyrifera_M_contig92648:500..7391622816839.8999174-CDS-M-pyrifera_M_contig92648:500..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92648 501..739 +
1692278209.15053-CDS-M-pyrifera_M_contig92648:500..7391692278209.15053-CDS-M-pyrifera_M_contig92648:500..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92648 501..739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92648.21438.1prot_M-pyrifera_M_contig92648.21438.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92648 2..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92648.21438.1

>prot_M-pyrifera_M_contig92648.21438.1 ID=prot_M-pyrifera_M_contig92648.21438.1|Name=mRNA_M-pyrifera_M_contig92648.21438.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
LELEVPRPAALSLLSSGGEGINKLRTDTGAMIDLVLGEDSGTDGKRGRRG
RRGGGGKQTTTKIQPTSATAVIVVSAQDEEKLQEAKQAVMDAIGDFVTET
LLVSGPAVAAIVGKKGATIQALQKDHSVSIDIQQDETPKKGGRRSKEWVL
ETATVRIMGATEAVTEAAAKVQEIADENQVKTVPIPDSDVIPTLLGAKGA
ALRELQTEHKVASIDIIRGT
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mRNA from alignment at M-pyrifera_M_contig92648:2..739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92648.21438.1 ID=mRNA_M-pyrifera_M_contig92648.21438.1|Name=mRNA_M-pyrifera_M_contig92648.21438.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig92648:2..739+ (Macrocystis pyrifera P11B4 male)
TTGGAACTGGAGGTCCCACGACCAGCAGCACTTTCGCTGCTCTCAAGTGG
TGGGGAGGGCATCAACAAACTGCGGACTGACACTGGAGCCATGATTGACC
TTGTGCTTGGAGAAGACAGTGGAACGGACGGGAAGAGAGGGAGGAGGGGA
CGGAGAGGCGGAGGAGGCAAGCAGACCACCACCAAGATCCAACCCACCAG
TGCCACTGCCGTCATTGTAGTGTCTGCACAAGACGAAGAGAAACTGCAAG
AAGCCAAGCAAGCTGTCATGGATGCCATTGGAGATTTTGTCACTGAAACA
CTGCTCGTCTCGGGACCTGCAGTCGCAGCAATTGTCGGAAAGAAAGGAGC
CACGATCCAAGCGCTCCAGAAGGATCATTCGGTTTCCATCGACATCCAGC
AGGACGAAACCCCCAAAAAGGGTGCTGCAACGGAAGGAGATGGAGAAGGG
GAAGGAGAAGGAGGAAGCGCAGGGGGTGGAGGGAAGAAGAAGAAGAAAGG
AGGCAGGAGAAGTAAAGAATGGGTCTTGGAAACTGCTACTGTCCGAATCA
TGGGTGCAACAGAAGCAGTCACTGAAGCTGCAGCAAAAGTACAAGAAATT
GCTGACGAAAACCAAGTCAAAACAGTCCCCATCCCTGACTCTGATGTCAT
CCCAACTCTCCTTGGTGCCAAAGGTGCTGCATTGCGAGAATTGCAGACAG
AACACAAGGTAGCTAGTATCGACATTATTCGTGGCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92648:2..739+

>mRNA_M-pyrifera_M_contig92648.21438.1 ID=mRNA_M-pyrifera_M_contig92648.21438.1|Name=mRNA_M-pyrifera_M_contig92648.21438.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig92648:2..739+ (Macrocystis pyrifera P11B4 male)
TTGGAACTGGAGGTCCCACGACCAGCAGCACTTTCGCTGCTCTCAAGTGG
TGGGGAGGGCATCAACAAACTGCGGACTGACACTGGAGCCATGATTGACC
TTGTGCTTGGAGAAGACAGTGGAACGGACGGGAAGAGAGGGAGGAGGGGA
CGGAGAGGCGGAGGAGGCAAGCAGACCACCACCAAGATCCAACCCACCAG
TGCCACTGCCGTCATTGTAGTGTCTGCACAAGACGAAGAGAAACTGCAAG
AAGCCAAGCAAGCTGTCATGGATGCCATTGGAGATTTTGTCACTGAAACA
CTGCTCGTCTCGGGACCTGCAGTCGCAGCAATTGTCGGAAAGAAAGGAGC
CACGATCCAAGCGCTCCAGAAGGATCATTCGGTTTCCATCGACATCCAGC
AGGACGAAACCCCCAAAAAGGTTGGAACTGGAGGTCCCACGACCAGCAGC
ACTTTCGCTGCTCTCAAGTGGTGGGGAGGGCATCAACAAACTGCGGACTG
ACACTGGAGCCATGATTGACCTTGTGCTTGGAGAAGACAGTGGAACGGAC
GGGAAGAGAGGGAGGAGGGGACGGAGAGGCGGAGGAGGCAAGCAGACCAC
CACCAAGATCCAACCCACCAGTGCCACTGCCGTCATTGTAGTGTCTGCAC
AAGACGAAGAGAAACTGCAAGAAGCCAAGCAAGCTGTCATGGATGCCATT
GGAGATTTTGTCACTGAAACACTGCTCGTCTCGGGACCTGCAGTCGCAGC
AATTGTCGGAAAGAAAGGAGCCACGATCCAAGCGCTCCAGAAGGATCATT
CGGTTTCCATCGACATCCAGCAGGACGAAACCCCCAAAAAGGGAGGCAGG
AGAAGTAAAGAATGGGTCTTGGAAACTGCTACTGTCCGAATCATGGGTGC
AACAGAAGCAGTCACTGAAGCTGCAGCAAAAGTACAAGAAATTGCTGACG
AAAACCAAGTCAAAACAGTCCCCATCCCTGACTCTGATGTCATCCCAACT
CTCCTTGGTGCCAAAGGTGCTGCATTGCGAGAATTGCAGACAGAACACAA
GGTAGCTAGTATCGACATTATTCGTGGCACTGAGGCAGGAGAAGTAAAGA
ATGGGTCTTGGAAACTGCTACTGTCCGAATCATGGGTGCAACAGAAGCAG
TCACTGAAGCTGCAGCAAAAGTACAAGAAATTGCTGACGAAAACCAAGTC
AAAACAGTCCCCATCCCTGACTCTGATGTCATCCCAACTCTCCTTGGTGC
CAAAGGTGCTGCATTGCGAGAATTGCAGACAGAACACAAGGTAGCTAGTA
TCGACATTATTCGTGGCACT
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