prot_M-pyrifera_M_contig92476.21394.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig92476.21394.1
Unique Nameprot_M-pyrifera_M_contig92476.21394.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length119
Homology
BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A061RNT4_9CHLO (Transcription initiation factor TFIID subunit 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNT4_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.690e-10
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 0
Query:    4 ASEAVINLLRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVRE----PAIDRAKPKRKNKGKKEGTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKVRAVK 116
            A++ + + L+  PW   + FVE VR+   +G + +     GDP+G+ HG+SF++E    P    A   RK+ G   GT+ D+R+L V E E +L  +G T +++  + RW  +R +K
Sbjct:  585 AAKLIESELQITPWVLANNFVEAVREG--RGQLALVGN--GDPTGRGHGFSFLKEVRRQPNSSEAALARKDAGNITGTSADLRRLKVDEAEKILGKLGVTKQEIEGLTRWALIRLIK 697          
BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A061RM50_9CHLO (Transcription initiation factor TFIID subunit 1 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RM50_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-10
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 0
Query:    4 ASEAVINLLRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVRE----PAIDRAKPKRKNKGKKEGTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKVRAVK 116
            A++ + + L+  PW   + FVE VR+   +G + +     GDP+G+ HG+SF++E    P    A   RK+ G   GT+ D+R+L V E E +L  +G T +++  + RW  +R +K
Sbjct:  493 AAKLIESELQITPWVLANNFVEAVREG--RGQLALVGN--GDPTGRGHGFSFLKEVRRQPNSSEAALARKDAGNITGTSADLRRLKVDEAEKILGKLGVTKQEIEGLTRWALIRLIK 605          
BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A7S3XPI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPI2_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-7
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0
Query:   15 APWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVREPAIDRAKPKR---KNKGKKE------GTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKV 112
            +PW  T  FV++  +  E G + ++   VGDPSG   G+SFVRE  +     K    K  G  E      GT  D+RKL++ + E +L+ +G T  +V+A+ RW ++
Sbjct:   40 SPWYQTQSFVQVHLQGKESGKLRLTG--VGDPSGVGEGFSFVREEKVAGKAEKANALKLTGTDELVKQVTGTTADLRKLSMKDSERILLNLGMTPAEVKALKRWDRI 144          
BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A448ZCQ6_9STRA (Bromo domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCQ6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.640e-5
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 0
Query:   12 LRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVR---EPAIDRAKPKRKNKGKKE--GTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKVRAVK 116
            L+ APW  T  F ++  K    GMM ++   +GDPSG K G+SF+R     A   A P  +    K+  GT+ D+RKLT+ ++  +L   G   +Q+  + RW +V  ++
Sbjct:  972 LQLAPWHVTGEFTDVHVKGDGSGMMKLTG--LGDPSGIKQGFSFLRADDSKANKHAGPIGQTAEMKKITGTSDDLRKLTMKQMGNILKKHGMPQKQIDTLKRWDRVHVIR 1079          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A061RNT4_9CHLO5.690e-1033.33Transcription initiation factor TFIID subunit 1 (F... [more]
A0A061RM50_9CHLO5.780e-1033.33Transcription initiation factor TFIID subunit 1 n=... [more]
A0A7S3XPI2_HETAK1.850e-734.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448ZCQ6_9STRA1.640e-533.64Bromo domain-containing protein n=1 Tax=Pseudo-nit... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 13..111
e-value: 7.2E-10
score: 38.1
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1coord: 12..116
IPR040240Transcription initiation factor TFIID subunit 1PANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 12..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92476contigM-pyrifera_M_contig92476:7..363 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92476.21394.1mRNA_M-pyrifera_M_contig92476.21394.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig92476 7..363 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig92476.21394.1 ID=prot_M-pyrifera_M_contig92476.21394.1|Name=mRNA_M-pyrifera_M_contig92476.21394.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
VRAASEAVINLLRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKK
HGYSFVREPAIDRAKPKRKNKGKKEGTARDMRKLTVHELEALLIGMGHTA
EQVRAMGRWQKVRAVKSRA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022591TFIID_sub1_DUF3591
IPR040240TAF1