mRNA_M-pyrifera_M_contig92476.21394.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92476.21394.1
Unique NamemRNA_M-pyrifera_M_contig92476.21394.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A061RNT4_9CHLO (Transcription initiation factor TFIID subunit 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNT4_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.690e-10
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:   10 ASEAVINLLRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVRE----PAIDRAKPKRKNKGKKEGTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKVRAVK 348
            A++ + + L+  PW   + FVE VR+   +G + +     GDP+G+ HG+SF++E    P    A   RK+ G   GT+ D+R+L V E E +L  +G T +++  + RW  +R +K
Sbjct:  585 AAKLIESELQITPWVLANNFVEAVREG--RGQLALVGN--GDPTGRGHGFSFLKEVRRQPNSSEAALARKDAGNITGTSADLRRLKVDEAEKILGKLGVTKQEIEGLTRWALIRLIK 697
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BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A061RM50_9CHLO (Transcription initiation factor TFIID subunit 1 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RM50_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-10
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:   10 ASEAVINLLRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVRE----PAIDRAKPKRKNKGKKEGTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKVRAVK 348
            A++ + + L+  PW   + FVE VR+   +G + +     GDP+G+ HG+SF++E    P    A   RK+ G   GT+ D+R+L V E E +L  +G T +++  + RW  +R +K
Sbjct:  493 AAKLIESELQITPWVLANNFVEAVREG--RGQLALVGN--GDPTGRGHGFSFLKEVRRQPNSSEAALARKDAGNITGTSADLRRLKVDEAEKILGKLGVTKQEIEGLTRWALIRLIK 605
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BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A7S3XPI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPI2_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-7
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:   43 APWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVREPAIDRAKPKR---KNKGKKE------GTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKV 336
            +PW  T  FV++  +  E G + ++   VGDPSG   G+SFVRE  +     K    K  G  E      GT  D+RKL++ + E +L+ +G T  +V+A+ RW ++
Sbjct:   40 SPWYQTQSFVQVHLQGKESGKLRLTG--VGDPSGVGEGFSFVREEKVAGKAEKANALKLTGTDELVKQVTGTTADLRKLSMKDSERILLNLGMTPAEVKALKRWDRI 144
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BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Match: A0A448ZCQ6_9STRA (Bromo domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCQ6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.640e-5
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:   34 LRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKKHGYSFVR---EPAIDRAKPKRKNKGKKE--GTARDMRKLTVHELEALLIGMGHTAEQVRAMGRWQKVRAVK 348
            L+ APW  T  F ++  K    GMM ++   +GDPSG K G+SF+R     A   A P  +    K+  GT+ D+RKLT+ ++  +L   G   +Q+  + RW +V  ++
Sbjct:  972 LQLAPWHVTGEFTDVHVKGDGSGMMKLTG--LGDPSGIKQGFSFLRADDSKANKHAGPIGQTAEMKKITGTSDDLRKLTMKQMGNILKKHGMPQKQIDTLKRWDRVHVIR 1079
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92476.21394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A061RNT4_9CHLO5.690e-1033.33Transcription initiation factor TFIID subunit 1 (F... [more]
A0A061RM50_9CHLO5.780e-1033.33Transcription initiation factor TFIID subunit 1 n=... [more]
A0A7S3XPI2_HETAK1.850e-734.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448ZCQ6_9STRA1.640e-533.64Bromo domain-containing protein n=1 Tax=Pseudo-nit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92476contigM-pyrifera_M_contig92476:7..363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2850.Phatr42944
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000988,GO:0000989,GO:0001076,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006325,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0016740,GO:0016746,GO:0016747,GO:0017025,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034212,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0061733,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Protein of unknown function (DUF3591)
EggNOG OGs2XDI6@2836,COG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.8426595-CDS-M-pyrifera_M_contig92476:6..3631622816837.8426595-CDS-M-pyrifera_M_contig92476:6..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92476 7..363 -
1692278208.0385828-CDS-M-pyrifera_M_contig92476:6..3631692278208.0385828-CDS-M-pyrifera_M_contig92476:6..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92476 7..363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92476.21394.1prot_M-pyrifera_M_contig92476.21394.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92476 7..363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92476.21394.1

>prot_M-pyrifera_M_contig92476.21394.1 ID=prot_M-pyrifera_M_contig92476.21394.1|Name=mRNA_M-pyrifera_M_contig92476.21394.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
VRAASEAVINLLRSAPWATTHIFVELVRKKTEKGMMVISAGAVGDPSGKK
HGYSFVREPAIDRAKPKRKNKGKKEGTARDMRKLTVHELEALLIGMGHTA
EQVRAMGRWQKVRAVKSRA
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mRNA from alignment at M-pyrifera_M_contig92476:7..363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92476.21394.1 ID=mRNA_M-pyrifera_M_contig92476.21394.1|Name=mRNA_M-pyrifera_M_contig92476.21394.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig92476:7..363- (Macrocystis pyrifera P11B4 male)
GTACGTGCAGCAAGTGAAGCTGTGATCAACTTACTTCGCTCTGCACCATG
GGCAACGACTCATATTTTCGTGGAATTAGTACGCAAGAAGACTGAAAAAG
GAATGATGGTGATTTCAGCAGGTGCTGTTGGCGATCCTTCTGGCAAGAAG
CATGGATACTCTTTTGTCCGTGAACCTGCAATTGATCGAGCCAAACCAAA
GCGCAAAAACAAGGGGAAGAAAGAAGGGACAGCACGTGATATGCGCAAGT
TGACTGTTCATGAACTGGAAGCATTGTTGATCGGTATGGGTCATACCGCC
GAACAAGTGCGTGCAATGGGACGTTGGCAGAAAGTACGTGCTGTAAAGTC
ACGTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92476:7..363-

>mRNA_M-pyrifera_M_contig92476.21394.1 ID=mRNA_M-pyrifera_M_contig92476.21394.1|Name=mRNA_M-pyrifera_M_contig92476.21394.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig92476:7..363- (Macrocystis pyrifera P11B4 male)
GTACGTGCAGCAAGTGAAGCTGTGATCAACTTACTTCGCTCTGCACCATG
GGCAACGACTCATATTTTCGTGGAATTAGTACGCAAGAAGACTGAAAAAG
GAATGATGGTGATTTCAGCAGGTGCTGTTGGCGATCCTTCTGGCAAGAAG
CATGGATACTCTTTTGTCCGTGAACCTGCAATTGATCGAGCCAAACCAAA
GCGCAAAAACAAGGGGAAGAAAGAAGGGACAGCACGTGATATGCGCAAGT
TGACTGTTCATGAACTGGAAGCATTGTTGATCGGTATGGGTCATACCGCC
GAACAAGTGCGTGCAATGGGACGTTGGCAGAAAGTACGTGCTGTAAAGTC
ACGTGCCGTACGTGCAGCAAGTGAAGCTGTGATCAACTTACTTCGCTCTG
CACCATGGGCAACGACTCATATTTTCGTGGAATTAGTACGCAAGAAGACT
GAAAAAGGAATGATGGTGATTTCAGCAGGTGCTGTTGGCGATCCTTCTGG
CAAGAAGCATGGATACTCTTTTGTCCGTGAACCTGCAATTGATCGAGCCA
AACCAAAGCGCAAAAACAAGGGGAAGAAAGAAGGGACAGCACGTGATATG
CGCAAGTTGACTGTTCATGAACTGGAAGCATTGTTGATCGGTATGGGTCA
TACCGCCGAACAAGTGCGTGCAATGGGACGTTGGCAGAAAGTACGTGCTG
TAAAGTCACGTGCC
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