prot_M-pyrifera_M_contig90729.21027.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig90729.21027.1
Unique Nameprot_M-pyrifera_M_contig90729.21027.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length131
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: RR4_MORIN (30S ribosomal protein S4, chloroplastic n=111 Tax=Pentapetalae TaxID=1437201 RepID=RR4_MORIN)

HSP 1 Score: 249 bits (637), Expect = 1.030e-82
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSKKPRAGS+LRNQ RPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSNLRNQLRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A3P8MV99_9ROSA (30S ribosomal protein S4, chloroplastic n=17 Tax=Rosales TaxID=3744 RepID=A0A3P8MV99_9ROSA)

HSP 1 Score: 249 bits (636), Expect = 1.520e-82
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQ RPGKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR+VDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQLRPGKKSQYRIRLEEKQKLRFHYGLTEEQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRMVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A5D2XX47_GOSMU (Uncharacterized protein (Fragment) n=3 Tax=Gossypium TaxID=3633 RepID=A0A5D2XX47_GOSMU)

HSP 1 Score: 246 bits (628), Expect = 7.490e-82
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIA KAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR VDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRTVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: RR4_GOSBA (30S ribosomal protein S4, chloroplastic n=245 Tax=Pentapetalae TaxID=1437201 RepID=RR4_GOSBA)

HSP 1 Score: 246 bits (628), Expect = 2.420e-81
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIA KAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR VDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRTVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A816J141_BRANA ((rape) hypothetical protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A816J141_BRANA)

HSP 1 Score: 243 bits (620), Expect = 1.120e-80
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIPQARQLVNH HILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A6S7NY83_LACSI (Uncharacterized protein n=2 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NY83_LACSI)

HSP 1 Score: 242 bits (618), Expect = 1.280e-80
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLT+K+PRAGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIP ARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: RR4_POPTR (30S ribosomal protein S4, chloroplastic n=710 Tax=cellular organisms TaxID=131567 RepID=RR4_POPTR)

HSP 1 Score: 244 bits (623), Expect = 1.400e-80
Identity = 126/131 (96.18%), Postives = 129/131 (98.47%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIA KAKGSTGQVLLQLLEMRLDNILFRLGMASTIP+ARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRAGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A1L5YDB7_9ROSA (30S ribosomal protein S4, chloroplastic n=665 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1L5YDB7_9ROSA)

HSP 1 Score: 244 bits (622), Expect = 1.990e-80
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLTSK PR G+ LRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG IVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKNPRTGNTLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGGIVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A6B9TVH7_9ROSA (30S ribosomal protein S4, chloroplastic n=46 Tax=cellular organisms TaxID=131567 RepID=A0A6B9TVH7_9ROSA)

HSP 1 Score: 244 bits (622), Expect = 1.990e-80
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLG LPGLT+KKPRAGSDLRNQ RPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYV IAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQL+NHRHILVNG IVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGTLPGLTTKKPRAGSDLRNQLRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLINHRHILVNGGIVDIPSYRCK 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A890A094_VITNE (30S ribosomal protein S4, chloroplastic n=6 Tax=Lamiales TaxID=4143 RepID=A0A890A094_VITNE)

HSP 1 Score: 243 bits (620), Expect = 4.010e-80
Identity = 124/131 (94.66%), Postives = 129/131 (98.47%), Query Frame = 0 
Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131
            MSRYRGPRFKKIRRLGALPGLT+K+P+AGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKY+RIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKRPKAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCK 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RR4_MORIN1.030e-8298.4730S ribosomal protein S4, chloroplastic n=111 Tax=... [more]
A0A3P8MV99_9ROSA1.520e-8297.7130S ribosomal protein S4, chloroplastic n=17 Tax=R... [more]
A0A5D2XX47_GOSMU7.490e-8296.95Uncharacterized protein (Fragment) n=3 Tax=Gossypi... [more]
RR4_GOSBA2.420e-8196.9530S ribosomal protein S4, chloroplastic n=245 Tax=... [more]
A0A816J141_BRANA1.120e-8096.18(rape) hypothetical protein n=3 Tax=cellular organ... [more]
A0A6S7NY83_LACSI1.280e-8095.42Uncharacterized protein n=2 Tax=Lactuca saligna Ta... [more]
RR4_POPTR1.400e-8096.1830S ribosomal protein S4, chloroplastic n=710 Tax=... [more]
A0A1L5YDB7_9ROSA1.990e-8096.1830S ribosomal protein S4, chloroplastic n=665 Tax=... [more]
A0A6B9TVH7_9ROSA1.990e-8095.4230S ribosomal protein S4, chloroplastic n=46 Tax=c... [more]
A0A890A094_VITNE4.010e-8094.6630S ribosomal protein S4, chloroplastic n=6 Tax=La... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 89..131
e-value: 1.2E-5
score: 34.8
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 89..131
e-value: 4.1E-19
score: 68.0
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 89..131
score: 9.743
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..88
e-value: 4.8E-22
score: 89.2
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..88
e-value: 4.5E-21
score: 75.5
NoneNo IPR availableGENE3D1.10.1050.10coord: 1..94
e-value: 4.8E-26
score: 93.5
NoneNo IPR availablePANTHERPTHR11831:SF29coord: 22..131
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 3..131
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 95..131
e-value: 6.1E-19
score: 70.0
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 22..131
IPR018079Ribosomal protein S4, conserved sitePROSITEPS00632RIBOSOMAL_S4coord: 87..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90729contigM-pyrifera_M_contig90729:395..787 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90729.21027.1mRNA_M-pyrifera_M_contig90729.21027.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig90729 395..787 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig90729.21027.1 ID=prot_M-pyrifera_M_contig90729.21027.1|Name=mRNA_M-pyrifera_M_contig90729.21027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEE
KQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGM
ASTIPQARQLVNHRHILVNGRIVDIPSYRCK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR001912Ribosomal_S4/S9_N
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9
IPR018079Ribosomal_S4_CS