mRNA_M-pyrifera_M_contig90729.21027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig90729.21027.1
Unique Name	mRNA_M-pyrifera_M_contig90729.21027.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: RR4_MORIN (30S ribosomal protein S4, chloroplastic n=111 Tax=Pentapetalae TaxID=1437201 RepID=RR4_MORIN)

HSP 1 Score: 249 bits (637), Expect = 1.030e-82
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSKKPRAGS+LRNQ RPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSNLRNQLRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 131

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A3P8MV99_9ROSA (30S ribosomal protein S4, chloroplastic n=17 Tax=Rosales TaxID=3744 RepID=A0A3P8MV99_9ROSA)

HSP 1 Score: 249 bits (636), Expect = 1.520e-82
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQ RPGKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR+VDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQLRPGKKSQYRIRLEEKQKLRFHYGLTEEQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRMVDIPSYRCK 131

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A5D2XX47_GOSMU (Uncharacterized protein (Fragment) n=3 Tax=Gossypium TaxID=3633 RepID=A0A5D2XX47_GOSMU)

HSP 1 Score: 246 bits (628), Expect = 7.490e-82
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIA KAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR VDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRTVDIPSYRCK 131

[Close]

BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: RR4_GOSBA (30S ribosomal protein S4, chloroplastic n=245 Tax=Pentapetalae TaxID=1437201 RepID=RR4_GOSBA)

HSP 1 Score: 246 bits (628), Expect = 2.420e-81
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIA KAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR VDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRTVDIPSYRCK 131

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A816J141_BRANA ((rape) hypothetical protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A816J141_BRANA)

HSP 1 Score: 243 bits (620), Expect = 1.120e-80
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIPQARQLVNH HILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCK 131

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A6S7NY83_LACSI (Uncharacterized protein n=2 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NY83_LACSI)

HSP 1 Score: 242 bits (618), Expect = 1.280e-80
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLT+K+PRAGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIP ARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCK 131

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: RR4_POPTR (30S ribosomal protein S4, chloroplastic n=710 Tax=cellular organisms TaxID=131567 RepID=RR4_POPTR)

HSP 1 Score: 244 bits (623), Expect = 1.400e-80
Identity = 126/131 (96.18%), Postives = 129/131 (98.47%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSK+PRAGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKYVRIA KAKGSTGQVLLQLLEMRLDNILFRLGMASTIP+ARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRAGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCK 131

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BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A1L5YDB7_9ROSA (30S ribosomal protein S4, chloroplastic n=665 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1L5YDB7_9ROSA)

HSP 1 Score: 244 bits (622), Expect = 1.990e-80
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLTSK PR G+ LRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG IVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTSKNPRTGNTLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGGIVDIPSYRCK 131

[Close]

BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A6B9TVH7_9ROSA (30S ribosomal protein S4, chloroplastic n=46 Tax=cellular organisms TaxID=131567 RepID=A0A6B9TVH7_9ROSA)

HSP 1 Score: 244 bits (622), Expect = 1.990e-80
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLG LPGLT+KKPRAGSDLRNQ RPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYV IAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQL+NHRHILVNG IVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGTLPGLTTKKPRAGSDLRNQLRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLINHRHILVNGGIVDIPSYRCK 131

[Close]

BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Match: A0A890A094_VITNE (30S ribosomal protein S4, chloroplastic n=6 Tax=Lamiales TaxID=4143 RepID=A0A890A094_VITNE)

HSP 1 Score: 243 bits (620), Expect = 4.010e-80
Identity = 124/131 (94.66%), Postives = 129/131 (98.47%), Query Frame = 1

Query:    1 MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCK 393
            MSRYRGPRFKKIRRLGALPGLT+K+P+AGSDLRNQSR GKKSQYRIRLEEKQKLRFHYGLTE+QLLKY+RIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNGRIVDIPSYRCK
Sbjct:    1 MSRYRGPRFKKIRRLGALPGLTNKRPKAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCK 131

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig90729.21027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
RR4_MORIN	1.030e-82	98.47	30S ribosomal protein S4, chloroplastic n=111 Tax=...	[more]
A0A3P8MV99_9ROSA	1.520e-82	97.71	30S ribosomal protein S4, chloroplastic n=17 Tax=R...	[more]
A0A5D2XX47_GOSMU	7.490e-82	96.95	Uncharacterized protein (Fragment) n=3 Tax=Gossypi...	[more]
RR4_GOSBA	2.420e-81	96.95	30S ribosomal protein S4, chloroplastic n=245 Tax=...	[more]
A0A816J141_BRANA	1.120e-80	96.18	(rape) hypothetical protein n=3 Tax=cellular organ...	[more]
A0A6S7NY83_LACSI	1.280e-80	95.42	Uncharacterized protein n=2 Tax=Lactuca saligna Ta...	[more]
RR4_POPTR	1.400e-80	96.18	30S ribosomal protein S4, chloroplastic n=710 Tax=...	[more]
A0A1L5YDB7_9ROSA	1.990e-80	96.18	30S ribosomal protein S4, chloroplastic n=665 Tax=...	[more]
A0A6B9TVH7_9ROSA	1.990e-80	95.42	30S ribosomal protein S4, chloroplastic n=46 Tax=c...	[more]
A0A890A094_VITNE	4.010e-80	94.66	30S ribosomal protein S4, chloroplastic n=6 Tax=La...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig90729	contig	M-pyrifera_M_contig90729:395..787 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	251.1
Seed ortholog evalue	2.8e-64
Seed eggNOG ortholog	981085.XP_010098593.1
Preferred name	rps4
KEGG ko	ko:K02986
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
EggNOG free text desc.	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
EggNOG OGs	37TGK@33090,3G7BN@35493,4JR93@91835,COG0522@1,KOG3301@2759
COG Functional cat.	J
Best tax level	fabids
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011
Exons	1
Model size	393
Cds size	393
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816819.1927722-CDS-M-pyrifera_M_contig90729:394..787	1622816819.1927722-CDS-M-pyrifera_M_contig90729:394..787	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig90729 395..787 +
1692278196.971013-CDS-M-pyrifera_M_contig90729:394..787	1692278196.971013-CDS-M-pyrifera_M_contig90729:394..787	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig90729 395..787 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig90729.21027.1	prot_M-pyrifera_M_contig90729.21027.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig90729 395..787 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig90729:395..787+
coding sequence from alignment at M-pyrifera_M_contig90729:395..787+

protein sequence of mRNA_M-pyrifera_M_contig90729.21027.1

>prot_M-pyrifera_M_contig90729.21027.1 ID=prot_M-pyrifera_M_contig90729.21027.1|Name=mRNA_M-pyrifera_M_contig90729.21027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MSRYRGPRFKKIRRLGALPGLTSKKPRAGSDLRNQSRPGKKSQYRIRLEE
KQKLRFHYGLTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGM
ASTIPQARQLVNHRHILVNGRIVDIPSYRCK

mRNA from alignment at M-pyrifera_M_contig90729:395..787+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig90729.21027.1 ID=mRNA_M-pyrifera_M_contig90729.21027.1|Name=mRNA_M-pyrifera_M_contig90729.21027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig90729:395..787+ (Macrocystis pyrifera P11B4 male)
ATGTCGCGTTACAGAGGACCTCGTTTCAAAAAAATCCGTCGTCTGGGGGC
TTTACCAGGGCTAACTAGTAAAAAGCCTAGAGCCGGAAGCGATCTTAGAA
ACCAATCGCGCCCCGGCAAAAAATCTCAATATCGTATTCGTTTAGAAGAA
AAACAAAAATTGCGCTTTCATTATGGTCTTACAGAACAACAATTACTTAA
ATACGTTCGGATCGCCGGAAAAGCCAAAGGGTCAACAGGTCAGGTTTTAC
TACAATTACTTGAAATGCGTTTAGATAACATCCTTTTTCGATTAGGTATG
GCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCACAGACATATTTT
AGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90729:395..787+

>mRNA_M-pyrifera_M_contig90729.21027.1 ID=mRNA_M-pyrifera_M_contig90729.21027.1|Name=mRNA_M-pyrifera_M_contig90729.21027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig90729:395..787+ (Macrocystis pyrifera P11B4 male)
ATGTCGCGTTACAGAGGACCTCGTTTCAAAAAAATCCGTCGTCTGGGGGC
TTTACCAGGGCTAACTAGTAAAAAGCCTAGAGCCGGAAGCGATCTTAGAA
ACCAATCGCGCCCCGGCAAAAAATCTCAATATCGTATTCGTTTAGAAGAA
AAACAAAAATTGCGCTTTCATTATGGTCTTACAGAACAACAATTACTTAA
ATACGTTCGGATCGCCGGAAAAGCCAAAGGGTCAACAGGTCAGGTTTTAC
TACAATTACTTGAAATGCGTTTAGATAACATCCTTTTTCGATTAGGTATG
GCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCACAGACATATTTT
AGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAAATGTCGC
GTTACAGAGGACCTCGTTTCAAAAAAATCCGTCGTCTGGGGGCTTTACCA
GGGCTAACTAGTAAAAAGCCTAGAGCCGGAAGCGATCTTAGAAACCAATC
GCGCCCCGGCAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAA
AATTGCGCTTTCATTATGGTCTTACAGAACAACAATTACTTAAATACGTT
CGGATCGCCGGAAAAGCCAAAGGGTCAACAGGTCAGGTTTTACTACAATT
ACTTGAAATGCGTTTAGATAACATCCTTTTTCGATTAGGTATGGCTTCGA
CTATTCCTCAAGCCCGCCAATTAGTTAACCACAGACATATTTTAGTTAAT
GGTCGTATAGTAGATATACCAAGTTATCGCTGCAAA