prot_M-pyrifera_M_contig9025.20922.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9025.20922.1
Unique Nameprot_M-pyrifera_M_contig9025.20922.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length66
Homology
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.950e-34
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    3 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV +K+DERKQLGRIMLKGDTITLMQSV
Sbjct:   33 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.420e-28
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0
Query:    3 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEV LK + R Q+GRI+LKGDTITLMQ V
Sbjct:   35 RTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGV 97          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A091R4D2_LEPDC (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A091R4D2_LEPDC)

HSP 1 Score: 103 bits (258), Expect = 7.820e-28
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   10 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 74          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: UPI00090E5AAB (Uncharacterized protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=UPI00090E5AAB)

HSP 1 Score: 105 bits (261), Expect = 8.040e-28
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    2 QRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            QR+RVQ+WLYE   MRIEG I+GFDEYMN+VLD+AEE+HLK+  RKQLGRIMLKGD ITL+QSV
Sbjct:   49 QRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 112          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A6J3IQD3_SAPAP (Small nuclear ribonucleoprotein E n=2 Tax=Simiiformes TaxID=314293 RepID=A0A6J3IQD3_SAPAP)

HSP 1 Score: 103 bits (258), Expect = 8.500e-28
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   13 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 77          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7K9ER96_BARMA (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ER96_BARMA)

HSP 1 Score: 103 bits (258), Expect = 9.500e-28
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   17 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 81          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A850UCE1_GRUAM (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Grus americana TaxID=9117 RepID=A0A850UCE1_GRUAM)

HSP 1 Score: 103 bits (258), Expect = 1.060e-27
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   21 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 85          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7L2UBE8_BALRX (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2UBE8_BALRX)

HSP 1 Score: 103 bits (258), Expect = 1.090e-27
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   22 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 86          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7L4B6E4_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L4B6E4_9CHAR)

HSP 1 Score: 103 bits (258), Expect = 1.090e-27
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   22 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 86          
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7K9AW75_DRONO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Palaeognathae TaxID=8783 RepID=A0A7K9AW75_DRONO)

HSP 1 Score: 103 bits (258), Expect = 1.130e-27
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 65
            +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   23 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 87          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI1.950e-3495.24Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A835YX06_9STRA7.420e-2882.54Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A091R4D2_LEPDC7.820e-2873.85Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
UPI00090E5AAB8.040e-2876.56Uncharacterized protein n=1 Tax=Xenopus laevis Tax... [more]
A0A6J3IQD3_SAPAP8.500e-2873.85Small nuclear ribonucleoprotein E n=2 Tax=Simiifor... [more]
A0A7K9ER96_BARMA9.500e-2873.85Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A850UCE1_GRUAM1.060e-2773.85Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A7L2UBE8_BALRX1.090e-2773.85Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L4B6E4_9CHAR1.090e-2773.85Small nuclear ribonucleoprotein E (Fragment) n=4 T... [more]
A0A7K9AW75_DRONO1.130e-2773.85Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..64
e-value: 1.5E-12
score: 57.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..63
e-value: 2.3E-15
score: 56.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..65
e-value: 9.3E-30
score: 104.4
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 2..65
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 2..65
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9025contigM-pyrifera_M_contig9025:4560..5339 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9025.20922.1mRNA_M-pyrifera_M_contig9025.20922.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9025 4560..5351 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9025.20922.1 ID=prot_M-pyrifera_M_contig9025.20922.1|Name=mRNA_M-pyrifera_M_contig9025.20922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLG
RIMLKGDTITLMQSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf