prot_M-pyrifera_M_contig8932.20698.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig8932.20698.1
Unique Nameprot_M-pyrifera_M_contig8932.20698.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length119
Homology
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 3.260e-79
Identity = 111/118 (94.07%), Postives = 117/118 (99.15%), Query Frame = 0
Query:    1 MADTMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 118
            MADTMRFCSECNNIM+PKENKTDRKL+Y+C+RC Y+EDAQSGSCVYRNNLITTAGNKLDIVQTDV+DDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct:  120 MADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 5.440e-51
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    5 MRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            MRFC ECNNI++PKEN+T R L YAC+RC Y+E+A   SCVY NNL+ T   KLDIV  DV++DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+  CG KWV
Sbjct:    1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 124 bits (312), Expect = 1.200e-34
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 0
Query:    4 TMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YP+ENK +++L YAC RC + EDA+  SCVYRN +  TA  +  ++Q DV  DPTL RSK   C  C + EAVFFQA    + + ++L FVC N  C H+W
Sbjct:    3 TMKFCRECNNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A7S3HGL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGL0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.760e-34
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 0
Query:    5 MRFCSECNNIMYPKENKTDRKLVYACSR--CTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            MRFC +CNN++YP+EN+  + L Y C +  C Y E     +CV+ N +I  +  +L+++ +DV  DPTLQRS++  C  C +NEAVFFQA++  KS +L+L+FVC N  CGHKW+
Sbjct:    2 MRFCQQCNNLLYPRENRQLKALEYYCKQNDCPYTEINLPSTCVFVNEIIKDSSTRLEVILSDVNKDPTLQRSRDINCTGCGFNEAVFFQAEQTTKSTALNLVFVCCN--CGHKWM 114          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: K0THW0_THAOC (TFIIS-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THW0_THAOC)

HSP 1 Score: 123 bits (309), Expect = 2.020e-33
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 0
Query:    5 MRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 118
            MRFC   ++++YPKEN ++RKLVYAC  C Y E A +G  +Y+N L    GN L  V  DV DDPTL RS+NA C KC ++EAV+FQ+D    +S+SL+LIFVC N  CG+KWV+
Sbjct:   65 MRFCPHDSSMLYPKENPSERKLVYACRLCRYTEYA-AGQLIYKNVLKKEVGNILHTVPADVSDDPTLPRSQNAHCGKCGHSEAVYFQSDTSDVRSESLALIFVCCN--CGYKWVA 176          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG)

HSP 1 Score: 121 bits (303), Expect = 2.710e-33
Identity = 54/114 (47.37%), Postives = 82/114 (71.93%), Query Frame = 0
Query:    4 TMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            + ++CSECNN++YP+E+KT+RKL++AC  C ++EDA + +CVYR+ ++  A ++  +V TD+  DPTL R+  A C +C Y EAVFFQ+        ++L +VC NRACGH+WV
Sbjct:    3 SFKYCSECNNMLYPREDKTNRKLLFACRNCHFEEDADN-NCVYRHEIVH-APSEQTMVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQSAARRADTKMTLFYVCCNRACGHRWV 113          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS)

HSP 1 Score: 120 bits (302), Expect = 3.620e-33
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0
Query:    5 MRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 118
            MRFC   ++++YPKEN+ +RKL+YAC  C Y E A  G  +Y+N L    GN L  V + V DDPTL RS+NA C+KC +NEAVFFQ+D    ++ +L+LIFVC N  C HKWV+
Sbjct:    1 MRFCPHDSSMLYPKENRNERKLLYACRLCRYTEYAP-GQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI)

HSP 1 Score: 120 bits (302), Expect = 3.840e-33
Identity = 56/113 (49.56%), Postives = 78/113 (69.03%), Query Frame = 0
Query:    4 TMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE++  + L+YAC  C ++E A+  +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAED-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A0K9RIQ4_SPIOL (DNA-directed RNA polymerase subunit n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A0K9RIQ4_SPIOL)

HSP 1 Score: 120 bits (302), Expect = 3.840e-33
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 0
Query:    4 TMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE+K  + L YAC  C ++E A++ +CVYRN +    G +  ++Q DV  DPTL R+K+  C +CN+ EAVFFQA    + + ++L FVC N +CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDKDQKILQYACRNCDHQEIAEN-NCVYRNEIHHAVGERTQVLQ-DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGE-EGMTLFFVCCNPSCGHRW 112          
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Match: A0A2I4F1N3_JUGRE (DNA-directed RNA polymerase subunit n=38 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I4F1N3_JUGRE)

HSP 1 Score: 120 bits (301), Expect = 5.450e-33
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 0
Query:    4 TMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNLITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI+YPKE+K  + L+YAC  C ++E A + +CVYRN +  + G +  ++Q DV  DPTL R+K+  C +CN+ EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:    3 TMKFCRECNNILYPKEDKEQKILLYACRNCDHQEAADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCAECNHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8932.20698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI3.260e-7994.07TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA5.440e-5168.14DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A1Y1IMB2_KLENI1.200e-3451.33DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A7S3HGL0_9STRA9.760e-3446.96Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K0THW0_THAOC2.020e-3353.91TFIIS-type domain-containing protein n=1 Tax=Thala... [more]
A0A8H7UCI9_9FUNG2.710e-3347.37DNA-directed RNA polymerase subunit n=2 Tax=Umbelo... [more]
B8BUI2_THAPS3.620e-3352.17DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A6P5Z8D8_DURZI3.840e-3349.56DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
A0A0K9RIQ4_SPIOL3.840e-3348.67DNA-directed RNA polymerase subunit n=3 Tax=Sperma... [more]
A0A2I4F1N3_JUGRE5.450e-3348.67DNA-directed RNA polymerase subunit n=38 Tax=Magno... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 77..118
e-value: 0.0023
score: 21.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 78..116
e-value: 1.8E-5
score: 24.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 75..117
score: 9.338
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 6..61
e-value: 3.7E-10
score: 49.7
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 5..40
e-value: 2.8E-11
score: 43.1
NoneNo IPR availableGENE3D2.20.25.10coord: 49..118
e-value: 1.5E-21
score: 77.7
NoneNo IPR availableGENE3D2.20.25.10coord: 2..48
e-value: 1.1E-19
score: 71.5
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 3..117
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 3..117
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 4..48
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 56..116
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 5..118
e-value: 6.9E-16
score: 56.7
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 7..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8932contigM-pyrifera_M_contig8932:3736..9394 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8932.20698.1mRNA_M-pyrifera_M_contig8932.20698.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig8932 3420..9433 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig8932.20698.1 ID=prot_M-pyrifera_M_contig8932.20698.1|Name=mRNA_M-pyrifera_M_contig8932.20698.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MADTMRFCSECNNIMYPKENKTDRKLVYACSRCTYKEDAQSGSCVYRNNL
ITTAGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQS
LSLIFVCTNRACGHKWVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS