prot_M-pyrifera_M_contig89129.20664.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig89129.20664.1
Unique Nameprot_M-pyrifera_M_contig89129.20664.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length83
Homology
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A5A8DC75_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DC75_CAFRO)

HSP 1 Score: 55.1 bits (131), Expect = 6.870e-7
Identity = 29/85 (34.12%), Postives = 45/85 (52.94%), Query Frame = 0
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALT----GTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRIQ 81
            H   +RS+ FSP   L+LSAS DGTC +        G     + +V   +      R+L+A+WHP+APL AT+S    + +  ++
Sbjct:  770 HSAAVRSVAFSPRGGLLLSASFDGTCRVLHSFPRPGGEGAGVLDEVAPAVAGGDGQRMLSARWHPWAPLLATTSTTGVLNVLHVR 854          
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A6A4WKT3_AMPAM (WD repeat-containing protein 47 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WKT3_AMPAM)

HSP 1 Score: 51.6 bits (122), Expect = 3.630e-6
Identity = 24/80 (30.00%), Postives = 41/80 (51.25%), Query Frame = 0
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 80
            H G++RS+ FSP    +L+A  D    ++ L G     +  V   +   HQD+++  +WHPY   F ++  D +  LW +
Sbjct:   77 HDGDVRSVRFSPHAFYLLTAGYDNRLVLSDLQGDLTMPLPSV---VVAQHQDKVITGRWHPYEFSFLSTGADKTCTLWAL 153          
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A6G3Z348_9CYAN (WD40 repeat domain-containing protein n=1 Tax=Leptolyngbya sp. SIO1D8 TaxID=2607807 RepID=A0A6G3Z348_9CYAN)

HSP 1 Score: 52.4 bits (124), Expect = 5.800e-6
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 0
Query:    5 IRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRIQ 81
            + SL FSP  R +LS   DGT AI  +    L  VG+   +  H+H   +L   + P   L+A++S+D +VKLWR+Q
Sbjct:  306 VTSLLFSPDGRYVLSGDSDGTLAIWDVEDMDL--VGRSDGQ--HSHARGILDITYDPVNGLYASASIDGTVKLWRLQ 378          
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: UPI001C90FB30 (WD repeat-containing protein 47-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C90FB30)

HSP 1 Score: 51.6 bits (122), Expect = 1.100e-5
Identity = 24/80 (30.00%), Postives = 41/80 (51.25%), Query Frame = 0
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 80
            H G++RS+ FSP    +L+A  D    ++ L G     +  V   +   HQD+++  +WHPY   F ++  D +  LW +
Sbjct:  360 HDGDVRSVRFSPHAFYLLTAGYDNRLVLSDLQGDLTMPLPSV---VVAQHQDKVITGRWHPYEFSFLSTGADKTCTLWAL 436          
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: A0A1D2NMU8_ORCCI (WD repeat-containing protein 47 (Fragment) n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NMU8_ORCCI)

HSP 1 Score: 51.6 bits (122), Expect = 1.120e-5
Identity = 24/80 (30.00%), Postives = 40/80 (50.00%), Query Frame = 0
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 80
            H G++RS+ FSP+    LS   D    +T L G   + +  V       H D++++ +WHP    F ++S D +  LW +
Sbjct:  485 HDGDVRSVRFSPNAFYCLSTGYDHRIMLTDLQGDLTQTINSVTVA---THDDKVISGRWHPKDFTFLSTSADKTASLWAL 561          
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: UPI000B902878 (WD repeat-containing protein 47 isoform X2 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B902878)

HSP 1 Score: 48.9 bits (115), Expect = 9.940e-5
Identity = 24/80 (30.00%), Postives = 39/80 (48.75%), Query Frame = 0
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 80
            H G++RS+ FSP    +LS   D    +T L G     +  V      +H D+++  +WHP    F ++S D +  LW +
Sbjct:  422 HNGDVRSVRFSPHAYYLLSGGYDHRLMLTDLQGDLSLNLTSVPVA---SHDDKVICGRWHPTDFSFLSTSADKTATLWAL 498          
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Match: UPI001604FDB0 (WD repeat-containing protein 47 isoform X1 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604FDB0)

HSP 1 Score: 48.9 bits (115), Expect = 9.960e-5
Identity = 24/80 (30.00%), Postives = 39/80 (48.75%), Query Frame = 0
Query:    1 HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAHQDRLLAAKWHPYAPLFATSSVDASVKLWRI 80
            H G++RS+ FSP    +LS   D    +T L G     +  V      +H D+++  +WHP    F ++S D +  LW +
Sbjct:  435 HNGDVRSVRFSPHAYYLLSGGYDHRLMLTDLQGDLSLNLTSVPVA---SHDDKVICGRWHPTDFSFLSTSADKTATLWAL 511          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89129.20664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8DC75_CAFRO6.870e-734.12Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6A4WKT3_AMPAM3.630e-630.00WD repeat-containing protein 47 n=2 Tax=Amphibalan... [more]
A0A6G3Z348_9CYAN5.800e-638.96WD40 repeat domain-containing protein n=1 Tax=Lept... [more]
UPI001C90FB301.100e-530.00WD repeat-containing protein 47-like n=1 Tax=Amphi... [more]
A0A1D2NMU8_ORCCI1.120e-530.00WD repeat-containing protein 47 (Fragment) n=1 Tax... [more]
UPI000B9028789.940e-530.00WD repeat-containing protein 47 isoform X2 n=1 Tax... [more]
UPI001604FDB09.960e-530.00WD repeat-containing protein 47 isoform X1 n=1 Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 39..79
e-value: 3.3E-4
score: 30.0
coord: 1..30
e-value: 50.0
score: 6.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 49..78
e-value: 0.0018
score: 19.1
coord: 1..26
e-value: 0.0018
score: 19.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 47..82
score: 11.979
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..25
score: 8.871
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..82
e-value: 2.7E-14
score: 55.2
IPR040067WD repeat-containing protein 47PANTHERPTHR19863FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR19863:SF5WD REPEAT-CONTAINING PROTEIN 47coord: 1..78
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..82
score: 15.004
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89129contigM-pyrifera_M_contig89129:266..514 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89129.20664.1mRNA_M-pyrifera_M_contig89129.20664.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig89129 266..514 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig89129.20664.1 ID=prot_M-pyrifera_M_contig89129.20664.1|Name=mRNA_M-pyrifera_M_contig89129.20664.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
HQGNIRSLHFSPSKRLILSASMDGTCAITALTGTSLRRVGQVHAELPHAH
QDRLLAAKWHPYAPLFATSSVDASVKLWRIQV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR040067WDR47
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf