prot_M-pyrifera_M_contig88255.20493.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88255.20493.1
Unique Nameprot_M-pyrifera_M_contig88255.20493.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length222
Homology
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BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: A0A0V0HRI7_SOLCH (DNA-directed RNA polymerase (Fragment) n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0V0HRI7_SOLCH)

HSP 1 Score: 387 bits (994), Expect = 2.190e-135
Identity = 194/204 (95.10%), Postives = 198/204 (97.06%), Query Frame = 0 
Query:   19 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            MLG GNE ISTIPGFNQIQFEGFCRFI+QGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERD VYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTG IISDWGGRLELEIDRKARIWARVSRK+KISILVL SAMG NLREILENVCYPEIF
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDVVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLLSAMGLNLREILENVCYPEIF 204
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BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: UPI001FB099C9 (DNA-directed RNA polymerase subunit beta-like n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB099C9)

HSP 1 Score: 385 bits (990), Expect = 2.020e-134
Identity = 194/204 (95.10%), Postives = 198/204 (97.06%), Query Frame = 0 
Query:   19 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            ML  GNE ISTIPGFNQIQFEGFCRFI+QGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTG IISDWGGR ELEIDRKARIWARVSRK+KISILVLSSAMG NLREILENVCYPEIF
Sbjct:    1 MLWDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIF 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: A0A3N7HMX9_POPTR (DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A3N7HMX9_POPTR)

HSP 1 Score: 392 bits (1008), Expect = 3.110e-134
Identity = 200/223 (89.69%), Postives = 210/223 (94.17%), Query Frame = 0 
Query:    1 MKNEQIVGFL-SLNGKFKKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            MKN+ I+GF  S+NGKFK MLG GN  +STIPGFNQIQFEGFCRFI+QGL EELYKFPKIED DQEIEFQLFVETYQLVEP IKERDAVYESLTYSSELYVS GLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSEL+HNGISVYTG IISDWGGR+ELEID+KARIWARVSRK+KISILVLSSAMG NLREILENVCYPEIF
Sbjct:   27 MKNDPIMGFFFSINGKFK-MLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRDQEIEFQLFVETYQLVEPSIKERDAVYESLTYSSELYVSGGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELNHNGISVYTGTIISDWGGRVELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIF 248
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BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: UPI001CB77220 (hypothetical protein n=1 Tax=Blastococcus sp. CPCC 205250 TaxID=2732513 RepID=UPI001CB77220)

HSP 1 Score: 383 bits (984), Expect = 1.310e-131
Identity = 192/204 (94.12%), Postives = 198/204 (97.06%), Query Frame = 0 
Query:   19 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            ML  GNE +STIPG NQIQFEGFCRFI+QGLTEELYKFPK+EDTDQEIEFQLFVETYQLVEP+IKERDAVYESLTYSSELYVSAGLIWK SRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTG IISDWGGRLELEIDRKARIWARVSRK+KISILVLSSAMGSNLREILENVCYPEIF
Sbjct:    1 MLRDGNEGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKMEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIF 204
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BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: K4KMY6_HUMBA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Humiria balsamifera TaxID=4009 RepID=K4KMY6_HUMBA)

HSP 1 Score: 384 bits (985), Expect = 4.210e-131
Identity = 191/203 (94.09%), Postives = 198/203 (97.54%), Query Frame = 0 
Query:   20 LGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            LG GNE +STIPGFNQIQFEGFCRFI+QGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERDAVYESLTYSSELYVSAGLIWK SRDMQEQTIF+GNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTG IISDWGGR+ELEIDRKARIWARVSRK+KISILVLSSAMG NLREILENVCYPEIF
Sbjct:    3 LGDGNEEMSTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTIFVGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRVELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIF 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: A0A2G2WIU7_CAPBA (DNA-directed RNA polymerase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2WIU7_CAPBA)

HSP 1 Score: 384 bits (986), Expect = 7.250e-131
Identity = 193/204 (94.61%), Postives = 198/204 (97.06%), Query Frame = 0 
Query:   19 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            ML  GNE ISTIPGFNQIQFEGFCRFI+QGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERDAVYESLTYSS+LYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTG IISDWGGR ELEIDRKARIWARVSRK+KISILVLSSAMG NLREILENVCYPEIF
Sbjct:    1 MLWDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSKLYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIF 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: E3W0I5_PRUPE (DNA-directed RNA polymerase subunit beta n=315 Tax=rosids TaxID=71275 RepID=E3W0I5_PRUPE)

HSP 1 Score: 403 bits (1035), Expect = 8.470e-131
Identity = 203/204 (99.51%), Postives = 204/204 (100.00%), Query Frame = 0 
Query:   19 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRK+KISILVLSSAMGSNLREILENVCYPEIF
Sbjct:    1 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIF 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: A0A7M1IB15_9ROSA (DNA-directed RNA polymerase subunit beta n=10 Tax=Maleae TaxID=721813 RepID=A0A7M1IB15_9ROSA)

HSP 1 Score: 402 bits (1032), Expect = 2.440e-130
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 0 
Query:   17 KKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            KKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERDAVYESLTYSSELYVSAGL+WKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRK+KISILVL SAMGSNLREILENVCYPEIF
Sbjct:    3 KKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLVWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLREILENVCYPEIF 208
[Close]
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: A0A2D3E2M8_MALMI (DNA-directed RNA polymerase subunit beta n=24 Tax=Maleae TaxID=721813 RepID=A0A2D3E2M8_MALMI)

HSP 1 Score: 399 bits (1026), Expect = 1.870e-129
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0 
Query:   17 KKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            KKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERDAVYES TYSSELYVSAGL+WKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRK+KISILVL SAMGSNLREILENVCYPEIF
Sbjct:    3 KKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESRTYSSELYVSAGLVWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLREILENVCYPEIF 208
[Close]
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Match: A0A2G3DEJ8_CAPCH (DNA-directed RNA polymerase n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A2G3DEJ8_CAPCH)

HSP 1 Score: 385 bits (990), Expect = 2.060e-129
Identity = 194/204 (95.10%), Postives = 198/204 (97.06%), Query Frame = 0 
Query:   19 MLGGGNEAISTIPGFNQIQFEGFCRFIEQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGIYYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILVLSSAMGSNLREILENVCYPEIF 222
            ML  GNE ISTIPGFNQIQFEGFCRFI+QGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEP+IKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRI+INQILQSPGIYYRSELDHNGISVYTG IISDWGGR ELEIDRKARIWARVSRK+KISILVLSSAMG NLREILENVCYPEIF
Sbjct:    1 MLWDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIF 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88255.20493.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V0HRI7_SOLCH2.190e-13595.10DNA-directed RNA polymerase (Fragment) n=3 Tax=cel... [more]
UPI001FB099C92.020e-13495.10DNA-directed RNA polymerase subunit beta-like n=1 ... [more]
A0A3N7HMX9_POPTR3.110e-13489.69DNA-directed RNA polymerase n=1 Tax=Populus tricho... [more]
UPI001CB772201.310e-13194.12hypothetical protein n=1 Tax=Blastococcus sp. CPCC... [more]
K4KMY6_HUMBA4.210e-13194.09DNA-directed RNA polymerase (Fragment) n=1 Tax=Hum... [more]
A0A2G2WIU7_CAPBA7.250e-13194.61DNA-directed RNA polymerase n=1 Tax=Capsicum bacca... [more]
E3W0I5_PRUPE8.470e-13199.51DNA-directed RNA polymerase subunit beta n=315 Tax... [more]
A0A7M1IB15_9ROSA2.440e-13097.57DNA-directed RNA polymerase subunit beta n=10 Tax=... [more]
A0A2D3E2M8_MALMI1.870e-12997.09DNA-directed RNA polymerase subunit beta n=24 Tax=... [more]
A0A2G3DEJ8_CAPCH2.060e-12995.10DNA-directed RNA polymerase n=2 Tax=Pentapetalae T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 146..218
e-value: 1.6E-19
score: 70.3
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 35..127
e-value: 1.2E-8
score: 34.8
NoneNo IPR availableGENE3D3.90.1100.10coord: 24..208
e-value: 1.4E-26
score: 95.3
NoneNo IPR availablePANTHERPTHR20856:SF25DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 23..221
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 26..220
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 23..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88255contigM-pyrifera_M_contig88255:3..668 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88255.20493.1mRNA_M-pyrifera_M_contig88255.20493.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88255 3..668 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88255.20493.1 ID=prot_M-pyrifera_M_contig88255.20493.1|Name=mRNA_M-pyrifera_M_contig88255.20493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
MKNEQIVGFLSLNGKFKKMLGGGNEAISTIPGFNQIQFEGFCRFIEQGLT
EELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKERDAVYESLTYSSELYV
SAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRILINQILQSPGI
YYRSELDHNGISVYTGIIISDWGGRLELEIDRKARIWARVSRKEKISILV
LSSAMGSNLREILENVCYPEIF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007642RNA_pol_Rpb2_2
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2