prot_M-pyrifera_M_contig86899.20204.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig86899.20204.1
Unique Nameprot_M-pyrifera_M_contig86899.20204.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length176
Homology
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A6C0HEB0_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HEB0_9ZZZZ)

HSP 1 Score: 61.6 bits (148), Expect = 1.070e-8
Identity = 47/136 (34.56%), Postives = 68/136 (50.00%), Query Frame = 0
Query:    5 FDGGSRPVPSQGGSGAVLYLNGIEI-ANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYHHISRNFNKRADEIANAACISEEAAVTIRN 139
            FDG S+  P   G+GAVLY N  EI  N        T+N AEY   +L +  AL   +   L + GDS+++I+ ++     K   L PL+    +         VY HI R +N RADE+ANAA   ++    I++
Sbjct:   34 FDGCSKGNPGPAGAGAVLYYNDREIWYNRKFVGRKETNNYAEYCGLLLGLNEALRE-NIRELKVCGDSQLVIKQMKGEYKLKSENLYPLYTEAKSMEKQFD-KIVYEHIYRQYNSRADELANAALEDQDFVDEIKS 167          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0DYB8_PARTE (RNase H type-1 domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DYB8_PARTE)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-7
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 0
Query:    1 FSVFFDGGSRPVPSQGGSGAVLYLNGIEIANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYHHISRNFNKRADEIANAACISEE 132
            ++++FDG S+  P   G+G  L+    +I   +      T+N AE+ A  L +   L+    + L  FGDSK+II+ + N+   K+  L  + + + +   L  +   Y HISRN N+ AD++A+AA +  +
Sbjct:  621 YTLYFDGASKSNPGPAGAGVALFDKMQQIKEITQPLGKQTNNVAEFLALFLGIRYTLNL-GINYLECFGDSKLIIDGMNNKINFKQQHLEDIRVAIYDYAQLFKMVR-YTHISRNQNEIADKLASAAALQSK 750          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A6N8VYZ1_9CHLR (Ribonuclease HI family protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N8VYZ1_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-7
Identity = 49/129 (37.98%), Postives = 67/129 (51.94%), Query Frame = 0
Query:    3 VFFDGGSRPVPSQGGSGAVLY-LNGIEIANDSATSPF--FTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLP-LPPVYHHISRNFNKRADEIANAA 127
             + DG SR  P     GAVL   +G+E+  D+  +P    T+N AEY  A+ AVE AL    ++ L +  DS++I+  L+ R   K   L PL   L   I  L    P   H+ RNFN+RAD +AN A
Sbjct:    5 AYADGASRGNPGPAAYGAVLCDADGVEL--DAWGNPIGPATNNVAEYHGAIAAVEAALDR-GATDLELRLDSELIVRQLEGRYRVKNQQLKPLFAQLSALIERLDSFQPT--HVRRNFNQRADAMANEA 128          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A7S1HED2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HED2_HEMAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.980e-7
Identity = 44/127 (34.65%), Postives = 59/127 (46.46%), Query Frame = 0
Query:    3 VFFDGGSRPVPSQGGSGAVLYLNGI--EIANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYHHISRNFNKRADEIANAA 127
            ++FDGGSR  P   GSGAV+YL G   E+   S       +N    +  +L+   A        L + GDSK++I  +QN     K  LLP H      +      P   H+ R  N RAD +ANAA
Sbjct:   27 LYFDGGSRGNPGLAGSGAVIYLAGTTEEVWTGSVFVGICETNNVAEYRGLLSGLSAAEKIRGKSLMVKGDSKLVINQVQNIWRVNKEHLLP-HCNDAKKLLGKIANPKLEHVRREHNTRADALANAA 152          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: UPI0019601160 (reverse transcriptase-like protein n=1 Tax=Virgibacillus halotolerans TaxID=1071053 RepID=UPI0019601160)

HSP 1 Score: 57.0 bits (136), Expect = 1.050e-6
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 0
Query:    2 SVFFDGGSRPVPSQGGSGAVLYLNGIE----IANDSATSPFFTSNQAEYFAAVLAV-ELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYHHISRNFNKRADEIANAA 127
            +V+FDGG      + G G V+Y +  E    +  ++      T+N+AEY A  LA+ ELA+      P+ I GDSK++I  L +     +  L      + N I  L + P Y  +SR  N+ AD++A+ A
Sbjct:   75 TVYFDGGFDLKTKKSGLGCVIYYDKNEKSFRLRKNALVEELHTNNEAEYAALHLALQELAILEVHHLPVTIVGDSKVVINQLNDEWPCYEAELSKWMDRIENQIKKLGITPEYEVVSRKENREADQLASQA 205          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A0D2GCW2_9DELT (Ribonuclease H n=1 Tax=Dethiosulfatarculus sandiegensis TaxID=1429043 RepID=A0A0D2GCW2_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 1.290e-6
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 0
Query:    6 DGGSRPVPSQGGSGAVLY-LNGIEIANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYHHISRNFNKRADEIANAA 127
            DG SR  P + G+GAVLY   G E+   +      T+N AEY   +L V+ AL    +S L++  DS+++++ L  +   K  +L PL   +   +  +    + H + R FNKRADE+AN A
Sbjct:   19 DGASRGNPGEAGAGAVLYDKEGGEVRALTRYLGKVTNNVAEYQGLILGVKAALELEVAS-LSVRLDSELLVKQLNGQYRVKSPLLKPLFDEVKTLLQGIEQVDIIH-VRREFNKRADELANQA 139          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A7S1NH51_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NH51_9EUGL)

HSP 1 Score: 56.2 bits (134), Expect = 3.960e-6
Identity = 50/188 (26.60%), Postives = 75/188 (39.89%), Query Frame = 0
Query:    2 SVFFDGGSRPVPSQGGSGAVLYLNGIEIANDSATSPF--------------FTSNQAEYFAAVLAVELALSH--PSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLL--PLPPVYHHISRNFNKRADEIANAACISEEAAVTIRNQPQNGRSNALP--------RAPPSLFSLLRKW 163
            +++FDGGSR  P   G+GA+L     E      +S F               T+N AEY   +L +E  L H       L ++GDSK++++ +  +       L PLH      +  L        HH+ R  N  AD ++N A  S +      + P     N+L         R P S  S+   W
Sbjct:   41 ALWFDGGSRGNPGTAGAGAILRATCSEPLGREPSSQFNTRVLWKGYTFIGKHTNNVAEYKGLLLGLETVLLHLVDQCKRLEVYGDSKLVVQQVTGKWRVHNEGLKPLHERAQALLQRLHKQCRVSVHHVRRQHNTEADALSNVAMDSRQDWEEWTDPPSQSYPNSLDLTSGPTPIRVPASTSSITPTW 228          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A329STI0_9STRA (RNase H type-1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329STI0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.260e-6
Identity = 47/135 (34.81%), Postives = 63/135 (46.67%), Query Frame = 0
Query:    1 FSVFFDGGSRPVPSQGGSGAVLYLNG-----IEI---ANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYHHISRNFNKRADEIANAA 127
            + + FDGGSR  P  GGSGAV+   G     +++   A  S T    T+N AE    +  +   + + + SPLNI GDS++II     R  P    L  +          L L    HH  R FNK AD +AN A
Sbjct:  375 YLLLFDGGSRGNPGPGGSGAVVVDLGQTATQVKVCWFAGMSYTDKATTNNDAENMGLLSGLRACVKY-NWSPLNIVGDSQLIIRQRTRRKAPLARYLPTIFWKCRRLTGKLKLLTWQHH-RREFNKAADALANVA 507          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A2W5XGG1_9BACT (Ribonuclease H n=2 Tax=Terrabacteria group TaxID=1783272 RepID=A0A2W5XGG1_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 9.240e-6
Identity = 42/129 (32.56%), Postives = 64/129 (49.61%), Query Frame = 0
Query:    1 FSVFFDGGSRPVPSQGGSGAVLY-LNGIEIANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYH--HISRNFNKRADEIANA 126
            ++++ DGGSR  P    +G V+   +G  +A         T+N AEY A +L ++ A       P+ +  DS++++  L      K   ++PLH     A  LL      H  H++RN NKRADEI NA
Sbjct:   29 YTIYTDGGSRGNPGPAAAGGVIVGADGSLLAELGEYLGVATNNVAEYRALILMLQKA-RELGCDPIEVRMDSELVVRQLNGSYRVKDAKMIPLH---AQATRLLRGFSASHIRHVTRNENKRADEIVNA 153          
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Match: A0A536MWI7_9CHLR (Ribonuclease HI family protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536MWI7_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-5
Identity = 43/128 (33.59%), Postives = 62/128 (48.44%), Query Frame = 0
Query:    3 VFFDGGSRPVPSQGGSGAVLY-LNGIEIANDSATSPFFTSNQAEYFAAVLAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAISLLPLPPVYH--HISRNFNKRADEIANAA 127
            +F DG SR  P   G G V+   NG+ +          T+N+AEY A +  +  A+       L ++ DSK+++E +  R   K   L+PLH     AI LL   P  H  H+ R  N+ AD +AN A
Sbjct:    6 LFTDGASRGNPGPAGIGVVIEDENGMRLRGLHRWLGVTTNNEAEYHALIEGLR-AVKDWKPDRLEVYLDSKLVVEQMNGRYRIKAPELIPLH---EKAIGLLRQFPDVHVAHVDREKNRGADALANMA 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86899.20204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6C0HEB0_9ZZZZ1.070e-834.56RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0DYB8_PARTE1.670e-730.30RNase H type-1 domain-containing protein n=1 Tax=P... [more]
A0A6N8VYZ1_9CHLR1.940e-737.98Ribonuclease HI family protein n=2 Tax=Chloroflexi... [more]
A0A7S1HED2_HEMAN1.980e-734.65Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI00196011601.050e-632.06reverse transcriptase-like protein n=1 Tax=Virgiba... [more]
A0A0D2GCW2_9DELT1.290e-634.96Ribonuclease H n=1 Tax=Dethiosulfatarculus sandieg... [more]
A0A7S1NH51_9EUGL3.960e-626.60Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A329STI0_9STRA8.260e-634.81RNase H type-1 domain-containing protein n=1 Tax=P... [more]
A0A2W5XGG1_9BACT9.240e-632.56Ribonuclease H n=2 Tax=Terrabacteria group TaxID=1... [more]
A0A536MWI7_9CHLR1.250e-533.59Ribonuclease HI family protein n=2 Tax=Chloroflexi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..130
e-value: 1.0E-20
score: 76.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 5..127
e-value: 2.0E-9
score: 37.3
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 1..129
score: 15.254
NoneNo IPR availablePANTHERPTHR46387:SF2POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 2..136
NoneNo IPR availablePANTHERPTHR46387FAMILY NOT NAMEDcoord: 2..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 110..176
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86899contigM-pyrifera_M_contig86899:44..571 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86899.20204.1mRNA_M-pyrifera_M_contig86899.20204.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig86899 44..571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig86899.20204.1 ID=prot_M-pyrifera_M_contig86899.20204.1|Name=mRNA_M-pyrifera_M_contig86899.20204.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
FSVFFDGGSRPVPSQGGSGAVLYLNGIEIANDSATSPFFTSNQAEYFAAV
LAVELALSHPSSSPLNIFGDSKIIIEALQNRTFPKKNILLPLHIMLINAI
SLLPLPPVYHHISRNFNKRADEIANAACISEEAAVTIRNQPQNGRSNALP
RAPPSLFSLLRKWLHPSCYDPSFPLP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR002156RNaseH_domain
IPR012337RNaseH-like_sf