prot_M-pyrifera_M_contig8669.20161.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig8669.20161.1
Unique Nameprot_M-pyrifera_M_contig8669.20161.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length263
Homology
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BLAST of mRNA_M-pyrifera_M_contig8669.20161.1 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 3.720e-52
Identity = 92/130 (70.77%), Postives = 109/130 (83.85%), Query Frame = 0 
Query:  127 MRAAQGVRTNMASYRAVMYAFSRAGDWASALGLYEDARREELQPSTGDLRTLVQVCGEAEQHERALSLLEEMRSEGMGMRKTGEKLWWVFNACGNKSIKERAWSIMEVEETRERVRLRAERNAQNGLPSD 256
            M +A GV TNM+S+RA M A+ RAGDWASAL L EDARR +L+P+T DLRT+V+ CG+AEQHERALSLLEEMRSEGM +R+TGEKLWWVFN C +K +KERAW +MEVE+TRERVRLRAERNAQ     +
Sbjct:  545 MCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTMVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQTRERVRLRAERNAQKAAAEE 674
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8669.20161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH7_ECTSI3.720e-5270.77PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..128
e-value: 3.2E-34
score: 120.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 129..203
e-value: 1.2E-8
score: 36.7
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 84..201
e-value: 1.4E-15
score: 57.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 33..61
e-value: 1.0E-4
score: 22.3
coord: 3..27
e-value: 0.1
score: 12.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 103..130
e-value: 3.1E-5
score: 21.9
coord: 34..64
e-value: 1.4E-6
score: 26.1
coord: 139..171
e-value: 2.0E-4
score: 19.3
coord: 3..28
e-value: 5.8E-4
score: 17.9
coord: 177..203
e-value: 0.0023
score: 16.0
coord: 68..101
e-value: 2.8E-8
score: 31.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 171..205
score: 7.826
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..29
score: 7.87
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 100..130
score: 7.52
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 65..99
score: 10.797
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 136..170
score: 10.03
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 30..64
score: 11.323
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8669contigM-pyrifera_M_contig8669:4861..7581 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8669.20161.1mRNA_M-pyrifera_M_contig8669.20161.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig8669 4855..7936 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig8669.20161.1 ID=prot_M-pyrifera_M_contig8669.20161.1|Name=mRNA_M-pyrifera_M_contig8669.20161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=263bp
MALKACAAAGRWEKTLEMLGDMRASGVNRSESSFVVAMKACGDAGRWEEA
LSLMDDMRSDGMPPMETAYTTAMKACGSSGEWERALGLFHEMCDTGIPPT
ELCFTAVIKACAKADETEKALSLLQGMRAAQGVRTNMASYRAVMYAFSRA
GDWASALGLYEDARREELQPSTGDLRTLVQVCGEAEQHERALSLLEEMRS
EGMGMRKTGEKLWWVFNACGNKSIKERAWSIMEVEETRERVRLRAERNAQ
NGLPSDDVPHGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat