prot_M-pyrifera_M_contig86530.20139.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig86530.20139.1
Unique Nameprot_M-pyrifera_M_contig86530.20139.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length245
Homology
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A517PXK7_9PLAN (RNA polymerase principal sigma factor HrdB n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517PXK7_9PLAN)

HSP 1 Score: 471 bits (1211), Expect = 8.660e-163
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI
Sbjct:  313 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 556          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A518IKE0_9PLAN (RNA polymerase sigma factor SigA n=16 Tax=Planctomycetaceae TaxID=126 RepID=A0A518IKE0_9PLAN)

HSP 1 Score: 460 bits (1184), Expect = 1.080e-158
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLYSIPLLTREEEAYYFRKLN+LKY+A QIQE LDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPG NFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGN+ELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI
Sbjct:  313 PGLPPYLASLYSIPLLTREEEAYYFRKLNYLKYRAFQIQENLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGNNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNEELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 556          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A836RB48_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RB48_9PLAN)

HSP 1 Score: 369 bits (947), Expect = 7.360e-123
Identity = 185/244 (75.82%), Postives = 220/244 (90.16%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLYSIPLLTR+EE YYFRK+N+LKY+AA+++E++DP RPKA DMD++EKLLDE+T++KNFLIRSNLRLVVSIAKRHIRP  NFFEMVSDGNMSLIRAIEKFDY+KGNKFSTYASWAIMKN+ARSIPAE+  LDRFRTGNDE+F  S+D+R SQ+ EELIN++Q  +I  IL QLD REKDI+ YRYGL+   EPQTLEQVG RFGVTKERIRQ+E+RAL+KLR+I Q E++++PG+
Sbjct:  312 PGLPPYLASLYSIPLLTRDEEVYYFRKMNYLKYQAAKLREQVDPARPKAEDMDRLEKLLDEATEIKNFLIRSNLRLVVSIAKRHIRPNTNFFEMVSDGNMSLIRAIEKFDYSKGNKFSTYASWAIMKNFARSIPAEHTQLDRFRTGNDEIFQNSSDDRTSQFEEELINRQQRQLIQEILGQLDEREKDIITYRYGLDE-GEPQTLEQVGQRFGVTKERIRQIEARALRKLRKIAQEEKLDVPGV 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A517Z5R6_9PLAN (RNA polymerase principal sigma factor HrdB n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z5R6_9PLAN)

HSP 1 Score: 362 bits (930), Expect = 2.710e-120
Identity = 179/244 (73.36%), Postives = 215/244 (88.11%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLY+IPLLTREEE YYFRK+N+LKY+AA++++ +D NRPKARD+DQ+E+ L  + ++KNFLIRSNLRLVVSIAKRH++P  NFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAE+ +LDRFRTG DE+F  S D+R SQY +E +N +QH VIM+ILDQLD RE+ I+++RYGL    EPQTLEQVG +FGVTKERIRQLESRAL+KLR+I   E+++IPG+
Sbjct:  311 PGLPPYLASLYTIPLLTREEEVYYFRKMNYLKYRAAELRDSIDRNRPKARDLDQLEERLQGAVEIKNFLIRSNLRLVVSIAKRHMKPSSNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEHTLLDRFRTGTDEIFQASRDDRSSQYEDEAVNSRQHQVIMAILDQLDERERAIIMHRYGLEQGTEPQTLEQVGAQFGVTKERIRQLESRALQKLRKIAHEEKLDIPGV 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A3E0Q7H0_9BACT (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q7H0_9BACT)

HSP 1 Score: 361 bits (927), Expect = 7.680e-120
Identity = 177/244 (72.54%), Postives = 219/244 (89.75%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLYSIPLLTREEEAYYFRK+N+ K+KA+++++K+D +RP+ RD+D++E+LL ++ +VKNFLIRSNLRLVVSIAKRH+ P  NFFEMVSDGNMSLIRAIEKFDYT+GNKFSTYA+WAIMKNYARSIPAEYKVLDRFRTGN+E+F  S D+R + Y EEL+N +QH +IMSIL+QLD RE+ I+++RYGL   +EP+TLEQVG +FGVTKERIRQLESRAL+KLR+I   E+++IPG+
Sbjct:  311 PGLPPYLASLYSIPLLTREEEAYYFRKMNYFKFKASRVRDKIDESRPRTRDLDKLEELLTKAVEVKNFLIRSNLRLVVSIAKRHMTPNTNFFEMVSDGNMSLIRAIEKFDYTRGNKFSTYATWAIMKNYARSIPAEYKVLDRFRTGNEEVFQSSHDDRGNPYAEELVNSRQHQMIMSILEQLDDRERSIIVHRYGLEQGSEPKTLEQVGTKFGVTKERIRQLESRALQKLRKIAHEEKLDIPGL 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A517QS22_9PLAN (RNA polymerase principal sigma factor HrdB n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QS22_9PLAN)

HSP 1 Score: 356 bits (913), Expect = 1.020e-117
Identity = 174/244 (71.31%), Postives = 218/244 (89.34%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLY++PLLTRE+E Y+FRK+N+LK+KAA++Q+K+DP  PK+R++DQ+E L++E+  VKNFLIRSNLRLVVSIAKRH++P  NFFEMVSDGNMSL+RAIEKFDYT+GNKFSTYA+WAIMKNYARSIPAE KVLDRFRTGN+E+FF S D R SQ+++E+ N +QH VIMSIL+ LD REK I+++RYGL   +EP+TLEQVG RFGVTKERIRQ+E+RA++K+R+I   E++EIPGI
Sbjct:  312 PGLPPYLASLYTVPLLTREQEGYWFRKMNYLKFKAAELQKKIDPQSPKSRELDQLEDLIEEAILVKNFLIRSNLRLVVSIAKRHMKPSVNFFEMVSDGNMSLMRAIEKFDYTQGNKFSTYATWAIMKNYARSIPAENKVLDRFRTGNEEVFFFSEDSRGSQFKDEITNSRQHEVIMSILEHLDDREKRIILHRYGLEKGSEPETLEQVGTRFGVTKERIRQIEARAMQKIRKIANEEKLEIPGI 555          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A257W6G2_9BACT (RNA polymerase subunit sigma-70 (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257W6G2_9BACT)

HSP 1 Score: 351 bits (901), Expect = 3.080e-117
Identity = 177/244 (72.54%), Postives = 211/244 (86.48%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLY+IPLLTREEE YYFRK+NF K++AA+++ ++DP RP+A+DMDQ+E LLD +T++KNFLIRSNLRLVVSIAKRH+RP  +FFEMVSDGNMSLIRAIEKFD+TKG KFSTYASWAIMKNYARSIPAE   LDRFRTGNDELF  S+D R  Q+ EE  N+KQ  +IMSILD LD RE+DI+++RYGL+    PQTLEQVG R GVTKERIRQLE+RAL+K+R++ Q E +EIPG+
Sbjct:  210 PGLPPYLASLYAIPLLTREEEVYYFRKMNFFKFQAAEVRSRIDPARPRAKDMDQVEALLDRATEIKNFLIRSNLRLVVSIAKRHMRPTTSFFEMVSDGNMSLIRAIEKFDFTKGFKFSTYASWAIMKNYARSIPAETVRLDRFRTGNDELFLASSDPRTDQFLEERTNKKQRELIMSILDHLDPRERDIIVHRYGLSEGAAPQTLEQVGTRLGVTKERIRQLEARALRKMRKLAQDESLEIPGV 453          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: UPI001424387D (sigma-70 family RNA polymerase sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001424387D)

HSP 1 Score: 354 bits (909), Expect = 3.990e-117
Identity = 179/244 (73.36%), Postives = 213/244 (87.30%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLYSIPLLTRE+E YYFRK+N+LK+KA  +++++D +RP+ ++MDQ+E LL ++T++KNFLIRSNLRLVVSIAKRHI+P  NFFEMVSDGNMSLIRAIEKFDY+KGNKFSTYASWAIMKNYARSIPA +   DRFRTG DELF QSTD+R +Q++EEL N++QHA IM IL+QLD REKDI+ YR+GL     P TLEQVG RFGVTKERIRQLE+RALKK R+I Q ER++IPGI
Sbjct:  312 PGLPPYLASLYSIPLLTREDEQYYFRKMNYLKFKARAVRDQIDMDRPRTKEMDQVEDLLGKATEIKNFLIRSNLRLVVSIAKRHIKPTSNFFEMVSDGNMSLIRAIEKFDYSKGNKFSTYASWAIMKNYARSIPAAHTQADRFRTGKDELFQQSTDDRSNQFQEELTNKRQHAAIMQILEQLDDREKDIIRYRFGLGQEG-PLTLEQVGSRFGVTKERIRQLEARALKKARKIAQQERLDIPGI 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A3B1DN84_9ZZZZ (RNA polymerase sigma factor RpoD n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DN84_9ZZZZ)

HSP 1 Score: 353 bits (907), Expect = 7.990e-117
Identity = 178/244 (72.95%), Postives = 213/244 (87.30%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLY+IPLLTREEEA+YFRK+NFLK +AA ++++LDP RPKA  MD++E LL+++  VKNFLIRSNLRLVVSIAK+HI+PGGNFFEMVSDGNMSLIRAIEKFDY +GNKFSTYASWAIMKN+AR+IP EY  LDRFRTG DE+F QSTD R + ++EEL+N+ QH  IM ILDQLD RE+DI+ +R+GL+   EP TLEQVG+ FGVTKERIRQ+ESRALKKLR+I   E+++IPGI
Sbjct:  311 PGLPPYLASLYAIPLLTREEEAHYFRKMNFLKCRAATLRDQLDPARPKASGMDEVENLLEDAIAVKNFLIRSNLRLVVSIAKKHIKPGGNFFEMVSDGNMSLIRAIEKFDYMQGNKFSTYASWAIMKNFARTIPKEYTRLDRFRTGKDEVFVQSTDVRANPFQEELVNRNQHQAIMDILDQLDERERDIIRFRFGLDYNQEPLTLEQVGNHFGVTKERIRQIESRALKKLRKIAVSEKLDIPGI 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A2D6SSW4_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SSW4_9PLAN)

HSP 1 Score: 349 bits (895), Expect = 5.300e-115
Identity = 172/244 (70.49%), Postives = 214/244 (87.70%), Query Frame = 0
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 244
            PGLPPYLASLYSIPLLTRE+E YYFRK+N+L + AA++++K+D  RPKA  MD++E L+++S D+KNFLIRSNLRLVVSIAKRHI+P  NFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKN+AR+IPAE+  LDRFRTGNDE+F +S++ R SQ+ +E++NQ Q  ++M ILDQLD RE+DI++ R+GLN  +EPQTLEQVG +FGVTKERIRQ+E+RAL KLRRI   ++++IPG+
Sbjct:  312 PGLPPYLASLYSIPLLTREDEEYYFRKMNYLLHCAAKVRDKIDRTRPKAAQMDEMEDLIEKSLDIKNFLIRSNLRLVVSIAKRHIKPNMNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNFARTIPAEHTRLDRFRTGNDEVFMRSSEHRGSQFEDEMVNQTQQQILMGILDQLDARERDIILCRFGLNRGSEPQTLEQVGGQFGVTKERIRQIEARALGKLRRIADEKKLDIPGV 555          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PXK7_9PLAN8.660e-163100.00RNA polymerase principal sigma factor HrdB n=3 Tax... [more]
A0A518IKE0_9PLAN1.080e-15897.54RNA polymerase sigma factor SigA n=16 Tax=Planctom... [more]
A0A836RB48_9PLAN7.360e-12375.82Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A517Z5R6_9PLAN2.710e-12073.36RNA polymerase principal sigma factor HrdB n=1 Tax... [more]
A0A3E0Q7H0_9BACT7.680e-12072.54RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]
A0A517QS22_9PLAN1.020e-11771.31RNA polymerase principal sigma factor HrdB n=1 Tax... [more]
A0A257W6G2_9BACT3.080e-11772.54RNA polymerase subunit sigma-70 (Fragment) n=1 Tax... [more]
UPI001424387D3.990e-11773.36sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A3B1DN84_9ZZZZ7.990e-11772.95RNA polymerase sigma factor RpoD n=1 Tax=hydrother... [more]
A0A2D6SSW4_9PLAN5.300e-11570.49RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 117..125
score: 72.11
coord: 93..106
score: 35.53
coord: 204..219
score: 54.27
coord: 219..230
score: 55.32
coord: 182..194
score: 37.32
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 204..230
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 69..125
e-value: 2.9E-11
score: 43.0
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 179..232
e-value: 4.1E-18
score: 64.6
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 68..232
e-value: 1.8E-26
score: 90.7
NoneNo IPR availableGENE3D1.20.120.1810coord: 4..137
e-value: 1.2E-27
score: 99.3
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 159..234
coord: 6..134
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 159..234
coord: 6..134
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 174..241
e-value: 7.1E-21
score: 75.6
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 4..133
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 154..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86530contigM-pyrifera_M_contig86530:3..737 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86530.20139.1mRNA_M-pyrifera_M_contig86530.20139.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig86530 3..737 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig86530.20139.1 ID=prot_M-pyrifera_M_contig86530.20139.1|Name=mRNA_M-pyrifera_M_contig86530.20139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKAR
DMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNM
SLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDEL
FFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARN
EPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR036388WH-like_DNA-bd_sf
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like