prot_M-pyrifera_M_contig86445.20129.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig86445.20129.1
Unique Name	prot_M-pyrifera_M_contig86445.20129.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	176

Homology

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BLAST of mRNA_M-pyrifera_M_contig86445.20129.1 vs. uniprot
Match: UPI001601197F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601197F)

HSP 1 Score: 55.5 bits (132), Expect = 6.800e-6
Identity = 47/179 (26.26%), Postives = 89/179 (49.72%), Query Frame = 0

Query:    1 LRSGTITELFGGPGRGKTAHCIAATAAVAVGVRDVRRSEGVGKRSVIFLRSSSIPIGDRLFSCLNRHLGDNDAAVGEAAGRVEEMGICGPLELLDVLRGLE--VRGKEKPW-----LLVVDSLASLLSPAMAGVAVGDGKKRVGKLGFSIVARVAALLRRLSGEFGISILVTNNETGGK 172
            + +G +TE+ G  G GKT  C++    VA  ++          ++V+++ ++    G +L   L+   G+ ++    A  R+    I  P +LLD+L+  +  +  +  P+     LL+VDS+A++LSP + G             G +I+  ++  L+ LS E  I++L+TNN   G+
Sbjct:   97 IYTGALTEVIGASGSGKTQICMSVAVHVASSLQ----------QNVLYMDTAGACSGHKLQDILHNSAGEREST---ALSRIGFRRIFDPWQLLDLLQKTKAAISKQTDPFYSKLKLLIVDSVAAVLSPTLGGQQTE---------GHAIMLNISRQLKVLSSEHSIAVLMTNNVVHGE 253

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig86445.20129.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig86445.20129.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
UPI001601197F	6.800e-6	26.26	DNA repair protein RAD51 homolog 4-like n=1 Tax=Br...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 2..167 e-value: 4.2E-6 score: 26.2
None	No IPR available	GENE3D	3.40.50.300		coord: 1..176 e-value: 2.9E-16 score: 61.7
None	No IPR available	PANTHER	PTHR46457	FAMILY NOT NAMED	coord: 1..172
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig86445	contig	M-pyrifera_M_contig86445:1..639 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig86445.20129.1	mRNA_M-pyrifera_M_contig86445.20129.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig86445 1..639 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig86445.20129.1 ID=prot_M-pyrifera_M_contig86445.20129.1|Name=mRNA_M-pyrifera_M_contig86445.20129.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
LRSGTITELFGGPGRGKTAHCIAATAAVAVGVRDVRRSEGVGKRSVIFLR
SSSIPIGDRLFSCLNRHLGDNDAAVGEAAGRVEEMGICGPLELLDVLRGL
EVRGKEKPWLLVVDSLASLLSPAMAGVAVGDGKKRVGKLGFSIVARVAAL
LRRLSGEFGISILVTNNETGGKGESS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013632	DNA_recomb/repair_Rad51_C
IPR027417	P-loop_NTPase