prot_M-pyrifera_M_contig85784.20002.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig85784.20002.1
Unique Nameprot_M-pyrifera_M_contig85784.20002.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length38
Homology
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BLAST of mRNA_M-pyrifera_M_contig85784.20002.1 vs. uniprot
Match: D7FR05_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR05_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 9.260e-10
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 
Query:    4 EQVLAVFPDTTSFYRGTISKQPVRKAGLVSEV 35
            + VLAVFPDTTSFYRGTISKQPVRKAGLV+E+
Sbjct:  197 DDVLAVFPDTTSFYRGTISKQPVRKAGLVAEL 228
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85784.20002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR05_ECTSI9.260e-1087.50SGF29 C-terminal domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 1..34
e-value: 3.8E-7
score: 32.1
IPR010750SGF29 tudor-like domainPFAMPF07039DUF1325coord: 3..29
e-value: 1.2E-7
score: 31.9
IPR010750SGF29 tudor-like domainPROSITEPS51518SGF29_Ccoord: 1..37
score: 12.954

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85784contigM-pyrifera_M_contig85784:544..657 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85784.20002.1mRNA_M-pyrifera_M_contig85784.20002.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig85784 544..657 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig85784.20002.1 ID=prot_M-pyrifera_M_contig85784.20002.1|Name=mRNA_M-pyrifera_M_contig85784.20002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
NNAEQVLAVFPDTTSFYRGTISKQPVRKAGLVSEVGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010750SGF29_tudor-like_dom