prot_M-pyrifera_M_contig8578.20001.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig8578.20001.1
Unique Name	prot_M-pyrifera_M_contig8578.20001.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	222

Homology

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BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.430e-62
Identity = 139/321 (43.30%), Postives = 161/321 (50.16%), Query Frame = 0

Query:    1 VLSYSFVNVNAVERAGNRHKRENMPRWAVVVLDGMEGMLHNNSWKRIVAVAVVL-----------------------------------------------------------------DCLFLPHSIPHQGPALLVTRLTAVFGVILLLDQAFRVGEWVRQGSGPGPLRLPGKGRSVHTKVAGVAVVLHTALVALLHCPLLLSLTCTCCSFVRNALLGDAGE--DSISDGGGG--------------------------------GWRLVGTHGGGGEAGMCMKLDSCTDQLLMLCFTLRLLRCWRLVTLNDTLHDHVNT 222
            VLSYSFVNVNAVER G R K E MP     +L+ ME +L    WK  VA  V+L                                                                 DC  LPHSIPHQGP L+VTRLT   G +LLLDQAF++ EW+ QG+GPGPL+L G G+S+HTKVAGV V+LHT +VALLHCP LLSL C+  SF  +     +G      S GGGG                                G  L    GGGG   MCM++D CTD LLML +TLRL+RCWRLVTLNDTLHDHVNT
Sbjct:  435 VLSYSFVNVNAVERQGKRKKWEKMPPRVARLLEKMEAVLATRWWKHTVAAVVLLVKPSGLLISFFSSVDNVLRWKRFRNFNSGATIPKMTRNFFVQREPSLDLADGLFFVFLSSLYMPPDCFILPHSIPHQGPGLMVTRLTLACGAVLLLDQAFQLAEWMHQGAGPGPLKLSG-GKSLHTKVAGVGVILHTLVVALLHCPPLLSLVCSLVSFTWDTFSSYSGSLPSEFSGGGGGPEFSVAEAEGLGGASGAWEGEICGLDEGVFGGGSELGVFKGGGGRERMCMEVDWCTDSLLMLAYTLRLVRCWRLVTLNDTLHDHVNT 754

[Close]

BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.240e-52
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0

Query:    1 VLSYSFVNVNAVERAGNRHKRENMPRWAVVVLDGMEGMLHNNSWKRIVAVAVVLDCLFLPHSIPHQGPALLVTRLTAVFGVILLLDQAFRVGEWVRQGSGPGPLRLPGKGRSVHTKVAGVAVVLHTALVALLHCPLLLSLTCTCCSFVRNALLGDAGE 158
            VLSYSFVNVNAVER G R K E MP     +L+ ME +L    WK  VA  V+LDC  LPHSIPHQGP L+VTRLT   G +LLLDQAF++ EW+ QG+GPGPL+L G G+S+HTKVAGV V+LHT +VALLHCP LLSL C+  SF  +    D+G 
Sbjct:  426 VLSYSFVNVNAVERQGKRKKWEKMPPRVAWLLEKMEAVLATRWWKHTVAAVVLLDCFILPHSIPHQGPGLMVTRLTMACGAVLLLDQAFQLAEWMHQGAGPGPLKLSG-GKSLHTKVAGVGVILHTLVVALLHCPPLLSLVCSLVSFAWDTFSSDSGS 582

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KF87_9PHAE	5.430e-62	43.30	Cyclic nucleotide-binding domain-containing protei...	[more]
D8LF40_ECTSI	6.240e-52	60.76	Putative two-pore calcium channel (Partial) (Fragm...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 90..116
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..63
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 69..89
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..46
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 64..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 139..222
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 117..138

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig8578	contig	M-pyrifera_M_contig8578:5285..9363 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig8578.20001.1	mRNA_M-pyrifera_M_contig8578.20001.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig8578 5285..9363 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig8578.20001.1 ID=prot_M-pyrifera_M_contig8578.20001.1|Name=mRNA_M-pyrifera_M_contig8578.20001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
VLSYSFVNVNAVERAGNRHKRENMPRWAVVVLDGMEGMLHNNSWKRIVAV
AVVLDCLFLPHSIPHQGPALLVTRLTAVFGVILLLDQAFRVGEWVRQGSG
PGPLRLPGKGRSVHTKVAGVAVVLHTALVALLHCPLLLSLTCTCCSFVRN
ALLGDAGEDSISDGGGGGWRLVGTHGGGGEAGMCMKLDSCTDQLLMLCFT
LRLLRCWRLVTLNDTLHDHVNT