prot_M-pyrifera_M_contig85445.19920.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig85445.19920.1
Unique Nameprot_M-pyrifera_M_contig85445.19920.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length131
Homology
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BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot
Match: A0A0G4I341_9ALVE (TRAF-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I341_9ALVE)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-5
Identity = 31/102 (30.39%), Postives = 47/102 (46.08%), Query Frame = 0 
Query:    9 CGLKFPEAHLAVHIGSRCVKRIISCPNGCGDRIEVAEMFLHEHECPNAPIRCA---CGQILNRNEHAEHTKKGCLEAMVFCPFGCGRKVRRNHVHQHARFEC 107
            C +  P+  +  H  + C KRI+ CPN CG+ +   E+ +H   CP     C    C   L R+   +H ++ C E  V CP      V  + + +H R EC
Sbjct:   25 CHMPIPKDQVDSH-PAVCRKRIVPCPNDCGEEMPKCEVLMHVKTCPLTEEECGYEGCSVTLARSFIEDH-REVCRERPVECPRCQKADVPFSRLKKHFRTEC 124
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BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot
Match: A9V3B5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V3B5_MONBE)

HSP 1 Score: 51.6 bits (122), Expect = 5.780e-5
Identity = 27/100 (27.00%), Postives = 43/100 (43.00%), Query Frame = 0 
Query:    8 GCGLKFPEAHLAVHIGSRCVKRIISCPN-GCGDRIEVAEMFLHEHECPNAPIRCACG---QILNRNEHAEHTKKGCLEAMVFCPFGCGRKVRRNHVHQHA 103
            GC        +  H+ + C  R+  CP+ GC       E+  H+  C    ++C  G     L  +    H    C E +V+CP GCG ++RR    +H+
Sbjct:  103 GCSAVIRVTEVDDHLANNCTMRVEKCPHAGCDFSGVAQEVAKHKKSCKYRWLKCPNGCRADDLTEDTLKRHLDALCPEMLVYCPEGCGARLRRRDFLEHS 202
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4I341_9ALVE2.920e-530.39TRAF-type domain-containing protein n=1 Tax=Chrome... [more]
A9V3B5_MONBE5.780e-527.00Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 77..131
e-value: 3.1E-8
score: 35.8
coord: 1..56
e-value: 2.7E-10
score: 42.3
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 49..102
e-value: 1.5E-8
score: 35.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 49..94
score: 10.058
NoneNo IPR availablePANTHERPTHR10131:SF129TNF RECEPTOR-ASSOCIATED FACTOR 6coord: 2..109
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 2..109
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 31..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85445contigM-pyrifera_M_contig85445:443..835 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85445.19920.1mRNA_M-pyrifera_M_contig85445.19920.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig85445 443..835 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig85445.19920.1 ID=prot_M-pyrifera_M_contig85445.19920.1|Name=mRNA_M-pyrifera_M_contig85445.19920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
SLTPCPLGCGLKFPEAHLAVHIGSRCVKRIISCPNGCGDRIEVAEMFLHE
HECPNAPIRCACGQILNRNEHAEHTKKGCLEAMVFCPFGCGRKVRRNHVH
QHARFECGKRDRMCPECGVVVAVDAIPRHLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like