prot_M-pyrifera_M_contig8536.19894.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig8536.19894.1
Unique Name	prot_M-pyrifera_M_contig8536.19894.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	284

Homology

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 4.460e-68
Identity = 133/209 (63.64%), Postives = 151/209 (72.25%), Query Frame = 0

Query:   76 RDSDSEPESVIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXASAASSENGGEREGKGGNPTEEAGVKGGAEGGRRELE-EEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 283
            RDSDSEPESVIAG       XX                  A    +E       + GN  + +G K   EG   + + EE+E RT+FVGNLPT+F PKKVK+ FKEYGA+ESVRLRSVAV+G AVDKAGDQQLVRKVCVNRGMVD+EVKSSVNAYVVYKD ASV+KAL+ANG DV GK +RVD+AKSGEYDHTRSVFLGNLPMDA E+E
Sbjct:  241 RDSDSEPESVIAGQGGDSSDXXMDDIDEGEEKDNNGVAMAAGRGKAEV------EAGNTEKASGAK--EEGSNDDKDDEERESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVKGTAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDGASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAAEEE 441

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.110e-65
Identity = 146/208 (70.19%), Postives = 163/208 (78.37%), Query Frame = 0

Query:   76 RDSDSEPESVIAGXXXXXXXXXXXXXXXXXXXXXXXXXXXASAASSENGGEREGKGGNPTEEAGVKGGAEGGRRELEEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 283
            RDSDSEPESVIAG       XXXXXXXXXXXX XXXX    + A+    G+ E + G+ T +A                KE RT+FVGNLPT+F PKKVK+ FKEYGA+ESVRLRSVAV+GMAVDKAGDQQLVRKVCVNRGMVD+EVKSSVNAYVVYKD ASV+KAL+ANG DV GK +RVD+AKSGEYDHTRSVFLGNLPMDAGE+E
Sbjct:  251 RDSDSEPESVIAGQGGDSSDXXXXXXXXXXXXGXXXXNNGVTKAAGR--GKAEAEAGD-TAKASAPKEXXXXXXXXXXXKESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAGEEE 455

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.610e-27
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0

Query:  152 EEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEY-DHTRSVFLGNLPMDAGED 282
            E+ KE RTIFVGNLPT+ + K+V++ FKEYG IESVR RS+A+ G  +D  G+Q+L +KV  N+ ++  + K + NAYVV+    S + A++AN   V+ K +RVD+  S    D  RSVFLGNLP DA ED
Sbjct:  204 EKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLS-DAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKED 334

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A448ZNA7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNA7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.660e-26
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 0

Query:  154 EKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAV--DKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGA-DVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGE 281
            E+E RTIFVGNLP T   K + + F+E G + S R+RSV V G+ +  D+AG+Q ++RKVCVN   +DK +  SV  YVV+K+LA V+KAL  N   ++ G +IRVD+A     D +RSVF+GNLP  A E
Sbjct:  118 EEEERTIFVGNLPLTTTRKGLAALFRECGPVASSRIRSVPVTGIKLPKDQAGNQNMMRKVCVNTNQIDKSLTDSVQGYVVFKELADVEKALEMNNKIELGGMKIRVDRATP-TVDPSRSVFVGNLPYAAKE 247

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A1S3DRM4_DIACI (RNA-binding protein 34-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3DRM4_DIACI)

HSP 1 Score: 107 bits (267), Expect = 2.140e-24
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 0

Query:  153 EEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 283
            EE+E RTIFVGNLP   N  +V S FK YG +E+VR RSV V         D  L RK C+    V  E ++++NAYV +K+L SV+KAL  NG  +D   IRVDKA +    ++ S+F+GN+P +A E+E
Sbjct:   59 EEQESRTIFVGNLPLKINRDRVTSMFKPYGEVETVRFRSVPV--------ADITLPRKACIKMNKVH-EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEE 180

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A7S4EFG3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFG3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.130e-23
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 0

Query:  156 EMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAV--DKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGA-DVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGE 281
            E RTIFVGNLP     K++ + F+E G + S R+RSV V  + +  D+AG+Q ++RKVCVN   +DK +   V  YVV+K+L  V+KAL  N   ++DG +IRVD+A     D +RSVF+GNLP  A E
Sbjct:  103 EERTIFVGNLPLATTRKELAALFRECGPVASSRIRSVPVTSIKLPQDQAGNQNMMRKVCVNTNQIDKTLTDKVQGYVVFKNLDDVEKALQMNNKLELDGMKIRVDRATP-TVDPSRSVFVGNLPYGAKE 230

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A3R7XV20_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XV20_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.860e-23
Identity = 58/133 (43.61%), Postives = 87/133 (65.41%), Query Frame = 0

Query:  151 LEEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 283
            +E+EK  RT+FVGN+      K +K+ F   G +E++RLR++ + G AVDKAG+Q+L+ KVC N+ ++    K + NAYV + +  SVD AL  NG  +  K+IRVD++K    D  RSVFLGN+P+   +D+
Sbjct:  134 IEDEKARRTVFVGNVSLDATKKDIKNHFAGCGKVENLRLRNLPIAGCAVDKAGNQKLMMKVCANKKILT-TAKDNCNAYVTFVEERSVDAALKLNGTILVQKKIRVDRSKP-VVDARRSVFLGNVPLKCTDDQ 264

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A225VJJ2_9STRA (RNA-binding protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJJ2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.470e-23
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 0

Query:  152 EEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 283
            EE K  RT+FVGN+      K +K+ F   G +ESVRLR + + G AVD+AG+Q+L+ KVC N+ ++    K + NAYV + D +SV+ A+  NG  +  K+IRVD A+  E D  RS+F+GN+P    +D+
Sbjct:    6 EELKSRRTVFVGNVSLDATQKDIKNHFSVCGKVESVRLRHLPIAGCAVDQAGNQKLMMKVCANKKILT-TAKDNCNAYVTFVDESSVEAAIKLNGTTLVQKKIRVDHAEP-EIDPRRSIFVGNVPFKCTDDQ 135

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: UPI001F04D481 (RNA-binding protein 34-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04D481)

HSP 1 Score: 103 bits (257), Expect = 1.150e-22
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0

Query:  152 EEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSG--EYDHTRSVFLGNLPMDAGE 281
            E E+  RTIFVGNLP +   K +K  FK+YG +ES RLRSVAV  +   K        KV V +   +   +S++NAYVV+KD  SV+KA+++NG  +    IRVD+   G  +YDH RS+F+GNL  D  E
Sbjct:   98 EPERLARTIFVGNLPLSIKRKDLKRIFKQYGEVESTRLRSVAVPDLKTPK--------KVAVIKRTFNSN-RSNINAYVVFKDKDSVEKAITSNGLKIQDLHIRVDRVDDGAKQYDHKRSIFVGNLKFDMEE 220

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BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Match: A0A3Q0IJ89_DIACI (RNA-binding protein 34-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0IJ89_DIACI)

HSP 1 Score: 107 bits (267), Expect = 1.650e-22
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 0

Query:  153 EEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVDKAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVDGKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDE 283
            EE+E RTIFVGNLP   N  +V S FK YG +E+VR RSV V         D  L RK C+    V  E ++++NAYV +K+L SV+KAL  NG  +D   IRVDKA +    ++ S+F+GN+P +A E+E
Sbjct:  260 EEQESRTIFVGNLPLKINRDRVTSMFKPYGEVETVRFRSVPV--------ADITLPRKACIKMNKVH-EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEE 381

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig8536.19894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KDC0_9PHAE	4.460e-68	63.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LFV0_ECTSI	2.110e-65	70.19	White-brown-complex ABC transporter family (Partia...	[more]
W7U9S2_9STRA	5.610e-27	50.00	Rna binding protein n=1 Tax=Nannochloropsis gadita...	[more]
A0A448ZNA7_9STRA	7.660e-26	49.62	Uncharacterized protein n=1 Tax=Pseudo-nitzschia m...	[more]
A0A1S3DRM4_DIACI	2.140e-24	46.56	RNA-binding protein 34-like n=1 Tax=Diaphorina cit...	[more]
A0A7S4EFG3_9STRA	1.130e-23	47.29	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A3R7XV20_9STRA	2.860e-23	43.61	Uncharacterized protein n=2 Tax=Peronospora effusa...	[more]
A0A225VJJ2_9STRA	5.470e-23	43.18	RNA-binding protein (Fragment) n=1 Tax=Phytophthor...	[more]
UPI001F04D481	1.150e-22	45.45	RNA-binding protein 34-like n=1 Tax=Xenia sp. Carn...	[more]
A0A3Q0IJ89_DIACI	1.650e-22	46.56	RNA-binding protein 34-like n=1 Tax=Diaphorina cit...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 54..283
None	No IPR available	PANTHER	PTHR23236:SF25	RNA-BINDING PROTEIN 34	coord: 54..283
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 29..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 17..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..284
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 159..257 e-value: 2.4E-8 score: 43.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 160..191 e-value: 4.3E-5 score: 23.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 158..261 score: 13.089
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 147..261 e-value: 2.1E-17 score: 65.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 155..283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig8536	contig	M-pyrifera_M_contig8536:2649..8510 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig8536.19894.1	mRNA_M-pyrifera_M_contig8536.19894.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig8536 2649..8511 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig8536.19894.1 ID=prot_M-pyrifera_M_contig8536.19894.1|Name=mRNA_M-pyrifera_M_contig8536.19894.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=284bp
RRTLEAQKRSDIAEKRAAALAAAAAAVSGEVAAAALSEEEGEGGEVDGME
GGDEEEEEEEEEEEEDSYDDVGDEERDSDSEPESVIAGQGGDSSDEEEEE
EEAVPAVGGRGDGDKASAASSENGGEREGKGGNPTEEAGVKGGAEGGRRE
LEEEKEMRTIFVGNLPTTFNPKKVKSRFKEYGAIESVRLRSVAVEGMAVD
KAGDQQLVRKVCVNRGMVDKEVKSSVNAYVVYKDLASVDKALSANGADVD
GKRIRVDKAKSGEYDHTRSVFLGNLPMDAGEDEA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf