prot_M-pyrifera_M_contig85289.19879.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig85289.19879.1
Unique Nameprot_M-pyrifera_M_contig85289.19879.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length139
Homology
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 7.790e-67
Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKVGRG 130
            GSRRDS GQR HLDLRELQSFALFPGQ VAVQGVNGSGGRMVARGIIDGVPRPLPSS PS+L R QH  ELGGG+ LSIFA AGPFTTSDSLVYEPLNDLLGAV+ A+PDVVVLMGPFVD+EHPKV  G
Sbjct:  296 GSRRDSSGQRAHLDLRELQSFALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRAQHGAELGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDSEHPKVASG 424          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.990e-39
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKVGRGRGE 133
            GSRRDSGG RV L+L +L +F+LFPGQ VAV+GVN SG +MV R II+G+PRP  +S   ++   QH++   GG  LS+   AGP+TT+DSL YEPL DLL  +   +PDV VL GPFVDA HP+V  G  E
Sbjct:  302 GSRRDSGGFRVKLELGQLPAFSLFPGQVVAVEGVNSSGFKMVVRRIIEGIPRPFLTSPAKKMLEFQHDSLYQGGGALSLLVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVDANHPQVASGETE 433          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A812STA5_SYMMI (DNA polymerase alpha subunit B (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812STA5_SYMMI)

HSP 1 Score: 139 bits (350), Expect = 8.740e-37
Identity = 70/129 (54.26%), Postives = 87/129 (67.44%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKVGRG 130
            GSR  S  +R HLDL+EL  +ALFPGQ V V+G+N SG RMVA+ I++GVPRPL  S PS L    H     GG  L++   AGPFTT+D+L YEPL +LL  V   KPDV++L+GPFVD+  P V  G
Sbjct:  196 GSRSGSSRRRAHLDLQELPQYALFPGQIVLVEGINASGRRMVAKRILEGVPRPLSQSPPSRLLEYHHSRLHQGGGALNVIVAAGPFTTTDNLDYEPLEELLRLVAEDKPDVLILIGPFVDSSQPLVAEG 324          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A7S2XQT5_9STRA (DNA polymerase alpha subunit B n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQT5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.120e-29
Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQS-FALFPGQAVAVQGVNGSGGRMVARGIIDGVPR-PLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKVGRGRGE 133
            GS   SGG+RVHLD+ +L + F+LFPGQ VAV+G+N  GG+M A+ I +G    PL +SA  EL ++ H+T+   G+ L I +++GP+TTSD+L YEPL  +L  V + KPDVV++ GPFVD  H  + +G+ E
Sbjct:  300 GSHDFSGGRRVHLDVSKLTTGFSLFPGQIVAVEGINAYGGKMTAQRICEGSSHEPLKTSA-KELLKLHHDTDHQNGQGLKIMSMSGPYTTSDNLDYEPLTAILEEVLMQKPDVVIMTGPFVDVTHKSIQQGKVE 432          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A7S0JQP6_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JQP6_CAFRO)

HSP 1 Score: 119 bits (297), Expect = 4.260e-29
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKP--DVVVLMGPFVDAEHPKVGRGR 131
            GSRR SGG RV LDL + ++FALFPGQ VA +G+N +G RMV + +  G   PLP S  + L          G  P+ ++A AGP++ +  L Y+PL+DLL     ++P  DV+VL GPFVDA+HP V  GR
Sbjct:  259 GSRRTSGGDRVQLDLMDCKAFALFPGQVVAARGMNATGSRMVVQSVAHGARLPLPRSPVAYLEAEAARCAANGSAPMRVWAAAGPYSLASDLEYQPLDDLLIEATQSEPPPDVLVLSGPFVDADHPHVRAGR 390          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS)

HSP 1 Score: 120 bits (302), Expect = 4.280e-29
Identity = 61/133 (45.86%), Postives = 83/133 (62.41%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLREL-------QSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKV 127
            GSR+DS G R+HLDL  L       QS++ FPGQ VAV+G+N SG  M A  + +GVP P+  S   EL +  +  +   G PLSI ++ GPFTT D+L Y+PL D++  +   +PDVV++ GPFVD   P V
Sbjct:  327 GSRKDSSGSRIHLDLNSLVTNNDNNQSYSFFPGQIVAVEGINSSGRTMQASRLYEGVPPPVEKSTAKELIKYNYGPDGQNGMPLSIVSMCGPFTTKDNLEYDPLVDMVMKISEDQPDVVIMCGPFVDGRQPLV 459          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A5A8DV68_CAFRO (DNA polymerase alpha subunit B n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DV68_CAFRO)

HSP 1 Score: 119 bits (297), Expect = 1.460e-28
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKP--DVVVLMGPFVDAEHPKVGRGR 131
            GSRR SGG RV LDL + ++FALFPGQ VA +G+N +G RMV + +  G   PLP S  + L          G  P+ ++A AGP++ +  L Y+PL+DLL     ++P  DV+VL GPFVDA+HP V  GR
Sbjct:  269 GSRRTSGGDRVQLDLMDCKAFALFPGQVVAARGMNATGSRMVVQSVAHGARLPLPRSPVAYLEAEAARCAANGSAPMRVWAAAGPYSLASDLEYQPLDDLLIEATQSEPPPDVLVLSGPFVDADHPHVRAGR 400          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A5A8C4S8_CAFRO (DNA polymerase alpha subunit B n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4S8_CAFRO)

HSP 1 Score: 119 bits (297), Expect = 2.060e-28
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKP--DVVVLMGPFVDAEHPKVGRGR 131
            GSRR SGG RV LDL + ++FALFPGQ VA +G+N +G RMV + +  G   PLP S  + L          G  P+ ++A AGP++ +  L Y+PL+DLL     ++P  DV+VL GPFVDA+HP V  GR
Sbjct:  358 GSRRTSGGDRVQLDLMDCKAFALFPGQVVAARGMNATGSRMVVQSVAHGARLPLPRSPVAYLEAEAARCAANGSAPMRVWAAAGPYSLASDLEYQPLDDLLIEATQSEPPPDVLVLSGPFVDADHPHVRAGR 489          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.730e-28
Identity = 65/129 (50.39%), Postives = 75/129 (58.14%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKVGRG 130
            GS RDSGG R  L L  L SFALFPGQ VA +G+N  G RM  RG++ G P P     P+                      AGP+TT D+L YEPLNDLL  V+  +PDVVVLMGPFVDAEHP +  G
Sbjct:  318 GSWRDSGGARAALALDALPSFALFPGQIVAARGINSGGMRMAVRGLLPGSPAP-----PAXXXXXXXXXXXXXXXXXXXXVAAGPYTTDDNLEYEPLNDLLAHVQETRPDVVVLMGPFVDAEHPLIAAG 441          
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Match: A0A843USD7_COLES (DNA polymerase alpha subunit B n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843USD7_COLES)

HSP 1 Score: 117 bits (293), Expect = 6.090e-28
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 0
Query:    2 GSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDGVPRPLPSSAPSELARVQHETELGGGRP-----LSIFAVAGPFTTSDSLVYEPLNDLLGAVKVAKPDVVVLMGPFVDAEHPKVGRG 130
            GS   SGGQRV LDL++L  F+LFPGQ + V+G N SG  ++A  + D +P  + SS PS   +   + +  G  P     LS+   AGPFTT+D+L++EPLN++L      +P +++LMGPFVD+EHP V RG
Sbjct:  274 GSVEHSGGQRVRLDLQKLVEFSLFPGQVIVVEGQNPSGHCLIASKVTDSLPLSIHSSVPSAKRQAIGQEDQSGVPPYTPKVLSMVIAAGPFTTTDNLLFEPLNEILAYASRKQPQLLILMGPFVDSEHPDVKRG 407          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85289.19879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ2_ECTSI7.790e-6786.05DNA polymerase alpha subunit B n=2 Tax=Ectocarpus ... [more]
W7TPC9_9STRA4.990e-3956.06DNA polymerase alpha subunit B n=2 Tax=Monodopsida... [more]
A0A812STA5_SYMMI8.740e-3754.26DNA polymerase alpha subunit B (Fragment) n=1 Tax=... [more]
A0A7S2XQT5_9STRA3.120e-2948.51DNA polymerase alpha subunit B n=1 Tax=Attheya sep... [more]
A0A7S0JQP6_CAFRO4.260e-2946.97Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
B8BYS5_THAPS4.280e-2945.86DNA polymerase alpha subunit B n=1 Tax=Thalassiosi... [more]
A0A5A8DV68_CAFRO1.460e-2846.97DNA polymerase alpha subunit B n=1 Tax=Cafeteria r... [more]
A0A5A8C4S8_CAFRO2.060e-2846.97DNA polymerase alpha subunit B n=2 Tax=Cafeteria r... [more]
A0A836CA88_9STRA3.730e-2850.39DNA polymerase alpha subunit B n=1 Tax=Tribonema m... [more]
A0A843USD7_COLES6.090e-2845.52DNA polymerase alpha subunit B n=1 Tax=Colocasia e... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.60.21.60coord: 56..138
e-value: 8.7E-21
score: 76.0
IPR007185DNA polymerase alpha/delta/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 81..131
e-value: 5.8E-9
score: 35.6
IPR016722DNA polymerase alpha, subunit BPANTHERPTHR23061DNA POLYMERASE 2 ALPHA 70 KDA SUBUNITcoord: 2..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85289contigM-pyrifera_M_contig85289:30..446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85289.19879.1mRNA_M-pyrifera_M_contig85289.19879.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig85289 30..446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig85289.19879.1 ID=prot_M-pyrifera_M_contig85289.19879.1|Name=mRNA_M-pyrifera_M_contig85289.19879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
KGSRRDSGGQRVHLDLRELQSFALFPGQAVAVQGVNGSGGRMVARGIIDG
VPRPLPSSAPSELARVQHETELGGGRPLSIFAVAGPFTTSDSLVYEPLND
LLGAVKVAKPDVVVLMGPFVDAEHPKVGRGRGEEGSGAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_a/d/e_bsu
IPR016722DNA_pol_alpha_bsu