prot_M-pyrifera_M_contig84957.19800.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig84957.19800.1
Unique Nameprot_M-pyrifera_M_contig84957.19800.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length102
Homology
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BLAST of mRNA_M-pyrifera_M_contig84957.19800.1 vs. uniprot
Match: A0A061S375_9CHLO (Light-gated proton channel rhodopsin n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S375_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 7.680e-5
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0 
Query:    1 VYVDDGEVSRRFFPALRYLGWLVTCPILVAHMHGLPIGMKHKDPRRTLSALVVNQVMTCFGVASVLF-GGTARIVLFVI 78
            VY   G V+    P LRY+ WL+TCP+++ H+  L  G+  +   RT+  L  +Q   CFGV + L   G  +I+ FVI
Sbjct:  102 VYSVFGPVT----PWLRYIEWLLTCPVILIHLSNLT-GLDEEYSARTMHLLTADQGTICFGVTAALSPNGWIKILCFVI 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84957.19800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A061S375_9CHLO7.680e-537.97Light-gated proton channel rhodopsin n=3 Tax=Tetra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001425Archaeal/bacterial/fungal rhodopsinsPFAMPF01036Bac_rhodopsincoord: 15..91
e-value: 9.8E-8
score: 31.8
NoneNo IPR availableGENE3D1.20.1070.10coord: 2..102
e-value: 4.5E-13
score: 51.1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 92..102
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..72
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..67
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..17
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 10..91
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 65..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84957contigM-pyrifera_M_contig84957:15..320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84957.19800.1mRNA_M-pyrifera_M_contig84957.19800.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig84957 15..320 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig84957.19800.1 ID=prot_M-pyrifera_M_contig84957.19800.1|Name=mRNA_M-pyrifera_M_contig84957.19800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
VYVDDGEVSRRFFPALRYLGWLVTCPILVAHMHGLPIGMKHKDPRRTLSA
LVVNQVMTCFGVASVLFGGTARIVLFVIAALLYLVLCKLTFDVYKVCYDT
FP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001425Arc/bac/fun_rhodopsins