prot_M-pyrifera_M_contig84843.19771.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig84843.19771.1
Unique Nameprot_M-pyrifera_M_contig84843.19771.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length225
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig84843.19771.1 vs. uniprot
Match: A0A7S2RUW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUW1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.470e-16
Identity = 66/212 (31.13%), Postives = 93/212 (43.87%), Query Frame = 0 
Query:   16 AHRSAVTSLRFEDGGLRLASADAAGHVVVWRWRWRDSKDAFTSPSAPESYVPVDITHPSVQDTPIVDIAWRPG----------------RPQLVVCGHRNLLRLFDVGPKSLQPVRAFPSLSNAASHLTIAFSPDGRLLAAGGDSGTLTIWDVDSGVVLLGSARATHAGARIAFPSPLGSVHWSPTEHLVAATSFGDPNPVLLCEPKKRQPV 211
            AH + V +L  +    R+ S DA G  VVW WRW  S +   S   PE      I  P +Q   I  +A RP                 R QL++      L L+D+  ++   V  +       S L   FSPDGRL+ AGG+ G++ IWD  SG  L       H  + + F  P+  + W+P +H VA  + G   PVL+   +K   V
Sbjct:   42 AHHTHVNALAIDTDHHRVYSGDAEG--VVWSWRWESSGEDGASDFRPERA----IQPPKLQGRAITSLAMRPKLRVTGASNKGSEVTRRRNQLLIYSQGGFLILYDMSTRT--EVVQYRGAVCKNSRLPATFSPDGRLVLAGGEDGSVGIWDAWSGDSL------HHVFSEVRFTGPIMDISWNPRQHCVALAACGGNFPVLVGYARKNTAV 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84843.19771.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2RUW1_9STRA2.470e-1631.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 110..151
e-value: 7.8E-4
score: 28.7
coord: 63..105
e-value: 27.0
score: 8.0
coord: 7..46
e-value: 1.0
score: 16.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 128..151
e-value: 2.2E-4
score: 21.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 14..45
score: 8.537
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 128..155
score: 11.277
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 14..211
e-value: 2.0E-23
score: 84.9
NoneNo IPR availablePANTHERPTHR44499FAMILY NOT NAMEDcoord: 16..203
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 14..160
score: 11.603
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 17..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84843contigM-pyrifera_M_contig84843:195..869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84843.19771.1mRNA_M-pyrifera_M_contig84843.19771.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig84843 195..869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig84843.19771.1 ID=prot_M-pyrifera_M_contig84843.19771.1|Name=mRNA_M-pyrifera_M_contig84843.19771.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
GFASALGASGGGMGRAHRSAVTSLRFEDGGLRLASADAAGHVVVWRWRWR
DSKDAFTSPSAPESYVPVDITHPSVQDTPIVDIAWRPGRPQLVVCGHRNL
LRLFDVGPKSLQPVRAFPSLSNAASHLTIAFSPDGRLLAAGGDSGTLTIW
DVDSGVVLLGSARATHAGARIAFPSPLGSVHWSPTEHLVAATSFGDPNPV
LLCEPKKRQPVPDAARALAALGDL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf