prot_M-pyrifera_M_contig83179.19428.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig83179.19428.1
Unique Nameprot_M-pyrifera_M_contig83179.19428.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length177
Homology
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A6P4XET6_BRABE (DNA-directed RNA polymerase III subunit RPC8-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XET6_BRABE)

HSP 1 Score: 98.2 bits (243), Expect = 2.460e-22
Identity = 56/169 (33.14%), Postives = 102/169 (60.36%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNR-AVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEFME 168
            MF LV +TDT+ +PP LF  KL ++V+  +++K++NKV++ VGLC++   + ++ D+ + P +G +   V FR +V RP   E+++ ++   +R  V ++LGF   F ++L P +  ++     +F+++  V  +VW YE E+ GT   + + I   IR RVV   F++
Sbjct:    1 MFTLVEMTDTVRIPPHLFHIKLNDAVIEELNNKFANKVVYNVGLCIALFDITKLEDSFIFPGDGASHTRVHFRYVVFRPFMDEILQGRIRSCSREGVHVSLGF---FDDILIPPDALQQPS---KFDESEQV--WVWEYETEE-GTHDLF-MDINEEIRFRVVDEVFVD 159          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: Q6CNB9_KLULA (KLLA0E13751p n=3 Tax=Kluyveromyces TaxID=4910 RepID=Q6CNB9_KLULA)

HSP 1 Score: 93.2 bits (230), Expect = 2.440e-20
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAV---GIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEFME 168
            MF L ++ D + +PP  F    ++++V+ +++KY+NK++  +GLCV+ + +L+V + +L P +G AF+ VTFR LV +P  GE+V     GW       GI +     F ++  P     EG  +     +P    ++W  +DE     TK    +   IR RV    F++
Sbjct:    1 MFILTKVADLVRIPPDQFKRDTISTIVHELNTKYANKIIPHIGLCVTVYDVLDVDEGQLKPGDGAAFINVTFRALVFKPFVGEIVT----GWISQCTTEGIKVSLLGLFEDIFVPQNMLFEGSYF-----SPKENAWIWPMDDE-----TKLYFDVNEKIRFRVEQEVFVD 157          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A8C4Q1G5_EPTBU (Polymerase (RNA) III (DNA directed) polypeptide H n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4Q1G5_EPTBU)

HSP 1 Score: 91.3 bits (225), Expect = 1.610e-19
Identity = 55/169 (32.54%), Postives = 95/169 (56.21%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWN-RAVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEFME 168
            MF LV +TDT+ +PP  F   L ++VV  ++ K +NKV++ +GLC+    L+++ D+ + P +G +   V F+ +V RP   E+V  ++       V ++LGF   F +++ P E  ++     +F++T  V  + W YE  DDGT   + + IG  IR RV+   F++
Sbjct:    1 MFVLVAMTDTVRIPPWNFERILDDAVVEELNKKLANKVVYNIGLCICLFDLIKMEDSYVFPGDGASHTKVHFKYVVFRPFLDEIVVGKIRSCGPEGVQVSLGF---FDDIIIPPESLQQPS---KFDETEQV--WAWEYE-TDDGTHDLF-MDIGEDIRFRVIDETFVD 159          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A8C4Q1E8_EPTBU (Polymerase (RNA) III (DNA directed) polypeptide H n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4Q1E8_EPTBU)

HSP 1 Score: 91.3 bits (225), Expect = 7.800e-19
Identity = 55/169 (32.54%), Postives = 95/169 (56.21%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWN-RAVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEFME 168
            MF LV +TDT+ +PP  F   L ++VV  ++ K +NKV++ +GLC+    L+++ D+ + P +G +   V F+ +V RP   E+V  ++       V ++LGF   F +++ P E  ++     +F++T  V  + W YE  DDGT   + + IG  IR RV+   F++
Sbjct:    1 MFVLVAMTDTVRIPPWNFERILDDAVVEELNKKLANKVVYNIGLCICLFDLIKMEDSYVFPGDGASHTKVHFKYVVFRPFLDEIVVGKIRSCGPEGVQVSLGF---FDDIIIPPESLQQPS---KFDETEQV--WAWEYE-TDDGTHDLF-MDIGEDIRFRVIDETFVD 159          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A812YQT7_9DINO (Rpc25 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YQT7_9DINO)

HSP 1 Score: 90.9 bits (224), Expect = 1.110e-18
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEG-FVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEF 166
            MF L  L D +++ P+         V  ++DS+Y N++L GVGLC+  + L EV DA ++P +G A+  VTF+ ++ RP E EV+   +  WN   G+ +    FF ++  P     EG    +F +T D EG + W Y+  D   V  +     A ++ RV  V F
Sbjct:    1 MFLLRTLRDLVKLHPSSQNRPTSEVVCEQLDSRYGNRILPGVGLCICEYELTEVGDAIIIPGDGCAYTEVTFQLVIFRPMEDEVLTGTIKAWNHQ-GLQVSL-IFFEDIFIPASMMMEGS---QFNETEDGEGEWEWRYDPGDGSEVQSFLYDKEAPLKLRVTGVLF 162          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A8C4SYB9_ERPCA (RNA polymerase III subunit H n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SYB9_ERPCA)

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-18
Identity = 51/169 (30.18%), Postives = 93/169 (55.03%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNR-AVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEFME 168
            MF LV + DT+ +PP  F  +L +++V  ++ K +NKV+F VGLCV  + + ++ D+ + P +G +   V FR +V RP   E++  ++   ++  V ++LGF   F +++ P E  ++   ++  E       ++W YE  D+G    Y +  G  IR R+V   F++
Sbjct:    1 MFTLVEMVDTVRIPPWQFQSRLNDAIVEELNKKLANKVVFNVGLCVCLYDITKLEDSFIFPGDGASHTKVHFRYVVFRPFLDEIIVGKIKCCSQEGVHVSLGF---FDDIVIPPESLQQPAKFDEAEQV-----WLWEYE-TDEGAHDLY-MDHGEEIRFRIVDEVFID 159          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A4U0U915_9PEZI (Uncharacterized protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0U915_9PEZI)

HSP 1 Score: 87.8 bits (216), Expect = 4.720e-18
Identity = 46/144 (31.94%), Postives = 79/144 (54.86%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDG 144
            M+ LV L D +++PP+ F    + ++ + I++KY++KV+  +GLCV  HSL+  S+  +    G   V V FR +V RP +GE++   +   N+A GI +    FF +++ P +       W++  D    E F+W  ED + G
Sbjct:    1 MYILVALADVVQIPPSDFHKSSIRAIEDFINTKYADKVIHKIGLCVGFHSLISASEGLIGHGNGIVNVNVDFRMVVFRPFKGEILRGTITHSNQA-GIYISM-DFFEDIIVPPQLLFSNTTWDK--DEEGTEAFIWRSEDGEGG 140          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: J7S9Q1_KAZNA (Uncharacterized protein n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7S9Q1_KAZNA)

HSP 1 Score: 85.9 bits (211), Expect = 1.410e-17
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAVGIALGF-GSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYPVRIGAAIRGRVVSVEFME 168
            MF L ++ + + VPP  F  K   +V +++++KY+NKV+  +GLC+S + LLEV + +L P +G  +  VTFR L+ +P  GE++   +   N A G+ +   G  F ++  P       M ++     P+   +VW+ +D++     K    I   IR RV    F++
Sbjct:    1 MFILSKIKELVRVPPDQFQRKTAFAVTHQLNTKYANKVIPNLGLCISVYDLLEVDEGQLKPGDGATYTNVTFRALIFKPFVGEILTGWITNCN-ANGMQVTLKGQMFQDIFIPAN-----MLFDNCYFLPNESAWVWAMDDDN-----KLYFDINEMIRFRVEQEVFID 158          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A3M7CMG8_HORWE (Uncharacterized protein n=13 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7CMG8_HORWE)

HSP 1 Score: 86.3 bits (212), Expect = 1.840e-17
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGT 145
            M+ LV L D +++ P+ F      ++ + I++KYS+KV+  VGLCV  HSL+  S+  +    G   V V FR +V RP +GE++   +   +   GI +    FF +V+ P     EG  W +  D    E F+W  +D + GT
Sbjct:    1 MYTLVTLADVVQIAPSDFHKPSTRAIEDFINTKYSDKVIHKVGLCVGFHSLISASEGLIGHGNGIVNVNVDFRMIVFRPFKGEIIRGTITN-STVNGIFISM-DFFEDVIIPPPFLFEGTEWGK--DDQGTEAFIWRTDDGEGGT 141          
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Match: A0A2S6CKJ8_9PEZI (Uncharacterized protein n=5 Tax=Cercospora TaxID=29002 RepID=A0A2S6CKJ8_9PEZI)

HSP 1 Score: 85.5 bits (210), Expect = 2.480e-17
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 0
Query:    1 MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHSLLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAVGIALGFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDG 144
            MF L+ L D +++ P  F    + +V + I++KY++KV+  VGLC+  HSL+  S+  +    G   V V FR +V RP +GE++ A +   +   GI L    F+ ++L P E   EG  WE+  D      FVW  ED + G
Sbjct:    1 MFTLITLADVVQIHPNEFHKPSIRAVEDFINTKYADKVIHKVGLCIGFHSLISASEGLIGHGTGIVNVNVDFRLVVFRPFKGEILRATITQ-SSPQGIYLSL-DFYEDLLVPPETLFEGSTWEK--DENGTMAFVWRTEDGEGG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83179.19428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4XET6_BRABE2.460e-2233.14DNA-directed RNA polymerase III subunit RPC8-like ... [more]
Q6CNB9_KLULA2.440e-2030.41KLLA0E13751p n=3 Tax=Kluyveromyces TaxID=4910 RepI... [more]
A0A8C4Q1G5_EPTBU1.610e-1932.54Polymerase (RNA) III (DNA directed) polypeptide H ... [more]
A0A8C4Q1E8_EPTBU7.800e-1932.54Polymerase (RNA) III (DNA directed) polypeptide H ... [more]
A0A812YQT7_9DINO1.110e-1832.93Rpc25 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A8C4SYB9_ERPCA2.100e-1830.18RNA polymerase III subunit H n=3 Tax=Polypteridae ... [more]
A0A4U0U915_9PEZI4.720e-1831.94Uncharacterized protein n=1 Tax=Salinomyces thaila... [more]
J7S9Q1_KAZNA1.410e-1730.18Uncharacterized protein n=1 Tax=Kazachstania nagan... [more]
A0A3M7CMG8_HORWE1.840e-1733.10Uncharacterized protein n=13 Tax=Hortaea werneckii... [more]
A0A2S6CKJ8_9PEZI2.480e-1734.72Uncharacterized protein n=5 Tax=Cercospora TaxID=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 81..176
e-value: 5.7E-7
score: 32.0
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 1..169
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 1..169
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 9..76
e-value: 2.1E-13
score: 50.4
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..79
e-value: 2.8E-20
score: 74.0
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83179contigM-pyrifera_M_contig83179:251..878 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83179.19428.1mRNA_M-pyrifera_M_contig83179.19428.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig83179 251..878 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig83179.19428.1 ID=prot_M-pyrifera_M_contig83179.19428.1|Name=mRNA_M-pyrifera_M_contig83179.19428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MFELVRLTDTIEVPPALFGDKLVNSVVNRIDSKYSNKVLFGVGLCVSCHS
LLEVSDARLLPSEGGAFVTVTFRELVLRPREGEVVEAQVLGWNRAVGIAL
GFGSFFSNVLCPLEHFREGMAWERFEDTPDVEGFVWSYEDEDDGTVTKYP
VRIGAAIRGRVVSVEFMEPGSMTSHAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005576Rpb7-like_N
IPR036898RNA_pol_Rpb7-like_N_sf