prot_M-pyrifera_M_contig83126.19415.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig83126.19415.1
Unique Nameprot_M-pyrifera_M_contig83126.19415.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length273
Homology
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BLAST of mRNA_M-pyrifera_M_contig83126.19415.1 vs. uniprot
Match: A0A556V2P1_BAGYA (Cyclic nucleotide-gated cation channel beta-1 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556V2P1_BAGYA)

HSP 1 Score: 61.2 bits (147), Expect = 6.950e-7
Identity = 69/235 (29.36%), Postives = 110/235 (46.81%), Query Frame = 0 
Query:   36 TLTSLSLAYCTHTDAVIATAVQHTPL-LESLIVSNCKKLTDFGIQHAVKLLAMGRLQRLEFDNCFRVTDDAMDALAASDEVANLRHLSIAH-----NVGLHEPAIRGLLSRLPRALFLNVSKC-NVTGDTL--NALPPRESAEAGDDSVALEELVASQCAGVTSVEDL-MVRAKDLSRVDLRK-TGLTDASVKAMSDHCRGLRQVNISDCGSISDDGAITLATLPLEDLNVSSCP 259
            TL SL L+  + T   + + V+   L LE L +S+CKKLTD+ I+H  +      L  L+          +M A+AA+  +  L+ LS++      N GL E      L+ LP    L++S+C N++   L      P+  A+       LE+L    C  +  +  +  + A  L  +DL    GLTD S+ A+S H  GL+ + +  C  I+D G + +   P+ D   S  P
Sbjct: 1397 TLRSLDLSRTSITPESLLSLVRIPGLHLEELSLSDCKKLTDYSIEHLCR--HQRNLHMLDLGGXXXXXXRSMLAVAAT--LKQLQSLSLSRVWRITNKGLAE------LTALPGLRSLDLSECVNISSAELVKGLSSPQHRAQ-------LEKLRLRSCTYIRDICSIAQLLASSLKELDLTSCNGLTDPSIHAVSSHLSGLQVLRLGSCKQITDWGLLGMEE-PVGDKKPSKQP 1613
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83126.19415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A556V2P1_BAGYA6.950e-729.36Cyclic nucleotide-gated cation channel beta-1 n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 249..272
e-value: 0.15
score: 21.2
coord: 87..112
e-value: 1.7
score: 17.7
coord: 115..140
e-value: 120.0
score: 6.0
coord: 223..248
e-value: 2.5
score: 17.1
coord: 10..40
e-value: 55.0
score: 8.8
coord: 198..222
e-value: 230.0
score: 4.0
coord: 59..84
e-value: 0.34
score: 20.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 162..273
e-value: 3.0E-15
score: 58.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..161
e-value: 1.9E-26
score: 94.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 222..246
e-value: 0.0057
score: 16.6
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 28..273
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 5..271

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83126contigM-pyrifera_M_contig83126:6..899 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83126.19415.1mRNA_M-pyrifera_M_contig83126.19415.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig83126 6..899 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig83126.19415.1 ID=prot_M-pyrifera_M_contig83126.19415.1|Name=mRNA_M-pyrifera_M_contig83126.19415.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=273bp
DGLQKLVQNCTALEELVLSSCRVTNDHVAVLSGCTTLTSLSLAYCTHTDA
VIATAVQHTPLLESLIVSNCKKLTDFGIQHAVKLLAMGRLQRLEFDNCFR
VTDDAMDALAASDEVANLRHLSIAHNVGLHEPAIRGLLSRLPRALFLNVS
KCNVTGDTLNALPPRESAEAGDDSVALEELVASQCAGVTSVEDLMVRAKD
LSRVDLRKTGLTDASVKAMSDHCRGLRQVNISDCGSISDDGAITLATLPL
EDLNVSSCPHITDELIQYLVQYC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt