prot_M-pyrifera_M_contig82739.19335.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig82739.19335.1
Unique Nameprot_M-pyrifera_M_contig82739.19335.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length117
Homology
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BLAST of mRNA_M-pyrifera_M_contig82739.19335.1 vs. uniprot
Match: UPI0006D1FD12 (IS5/IS1182 family transposase n=2 Tax=Nocardia arizonensis TaxID=1141647 RepID=UPI0006D1FD12)

HSP 1 Score: 58.5 bits (140), Expect = 8.500e-8
Identity = 36/101 (35.64%), Postives = 50/101 (49.50%), Query Frame = 0 
Query:    6 FSHKHQTNGLKVQTAVCHRGVLNKYIFHYSQPIKAAQHD-KSFYEATTLPELRLPGEVYLGDKGYAGATGVCSPFKGRDLNPTQKQYNRQLSAIHVKVEHA 105
            +S KH+ +G+ VQ      G     I   S  +  + HD K+ +    L EL   G + LGDKGY GA GV +P+KGR     QK  NR  + +  + E A
Sbjct:  121 YSGKHRRHGMNVQVIASPEGG----IVWVSPALPGSVHDSKAAWIWRVLHELEQQGWIVLGDKGYQGAQGVLTPYKGRGKPAAQKNANRAHAQLRGRGERA 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82739.19335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0006D1FD128.500e-835.64IS5/IS1182 family transposase n=2 Tax=Nocardia ari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 2..112
e-value: 7.3E-16
score: 58.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82739contigM-pyrifera_M_contig82739:366..716 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82739.19335.1mRNA_M-pyrifera_M_contig82739.19335.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig82739 366..716 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig82739.19335.1 ID=prot_M-pyrifera_M_contig82739.19335.1|Name=mRNA_M-pyrifera_M_contig82739.19335.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MREGSFSHKHQTNGLKVQTAVCHRGVLNKYIFHYSQPIKAAQHDKSFYEA
TTLPELRLPGEVYLGDKGYAGATGVCSPFKGRDLNPTQKQYNRQLSAIHV
KVEHANRDMNVFNSVGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom