prot_M-pyrifera_M_contig82627.19313.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig82627.19313.1
Unique Name	prot_M-pyrifera_M_contig82627.19313.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	267

Homology

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A0D6R633_ARACU (Pre-mRNA-splicing factor 38 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R633_ARACU)

HSP 1 Score: 111 bits (278), Expect = 7.720e-25
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRT-DTGYMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLERE 88
            GAFYLRLVG P ++YQYLEPLY DYRKL+++  D  + + H+DE+IDELL + + C IALP +P+RW LE + QLEPR S L++D E E
Sbjct:  103 GAFYLRLVGKPTDVYQYLEPLYNDYRKLRRKLPDESFTLSHVDEFIDELLTKDYACDIALPRVPKRWTLETSGQLEPRRSALEDDFEEE 191

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A210Q089_MIZYE (Pre-mRNA-splicing factor 38 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210Q089_MIZYE)

HSP 1 Score: 110 bits (274), Expect = 1.590e-24
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRT-DTGYMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLERED 89
            GAFY+RL GS ++ Y+YLEPLYYDYRKLK++  D G+ ++HMDE+IDEL+ E   C I LP L +R V+E++N L+PRVS L+EDLE  D
Sbjct:  103 GAFYMRLTGSSLDCYKYLEPLYYDYRKLKRQDKDGGFELIHMDEFIDELIREERVCDIILPRLQKRTVMEESNTLDPRVSALEEDLENMD 192

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A1Y1HWA0_KLENI (Pre-mRNA-splicing factor 38 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWA0_KLENI)

HSP 1 Score: 110 bits (275), Expect = 2.400e-24
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTG-YMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEE 92
            GAFYLRLVG P ++YQYLEPLY DYRKL+++T  G Y++ H+DE+IDELL     C I LP LP+R+ LE A  L+PR+S L++  E ED EE
Sbjct:  103 GAFYLRLVGKPTDVYQYLEPLYNDYRKLRQKTAEGKYILSHVDEFIDELLTRDSHCDITLPRLPKRYTLESAGTLDPRISALEDHFEEEDDEE 195

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: W7TQL1_9STRA (Pre-mRNA-splicing factor 38 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.600e-24
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTGYMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLD-EDLE 86
            GAFYLRLVG P++IYQYLEPLY DYRKL+ R   G+ + HMDE+I+ELL   +CC +ALP LP+R +LED   L PR+S LD EDL+
Sbjct:  103 GAFYLRLVGKPLDIYQYLEPLYNDYRKLRFRGVAGWALKHMDEFIEELLTSDYCCDVALPHLPKRHLLEDQKLLAPRISALDDEDLD 189

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A1Y2G9Y0_9FUNG (Pre-mRNA-splicing factor 38 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G9Y0_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 2.760e-24
Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTGYMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEEAKKK---AERSDG 102
            GAFYLRLVG PV+IY YLEPL  D RKL+KR   GY ++HMDE+ID+LL E   C I LP L +R VLEDA +L+PR+S L E LE E  EE K +   A R DG
Sbjct:  108 GAFYLRLVGKPVDIYNYLEPLLDDSRKLRKRGAGGYSIIHMDEFIDDLLREERVCDIVLPRLVKRHVLEDAGELDPRISTL-EKLEMELEEERKAEEAAARREDG 211

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A7S2W3S8_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.920e-24
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTGYMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEEAKKKAERSDGSD 104
            GAFYLRLVG PV+IY+YLE LY DYRK++ RT  G+ +V +DE+IDELL   + C IALP LP+RW LEDA  + PR++  ++DLE  D E+   K E  +G +
Sbjct:  106 GAFYLRLVGKPVDIYKYLELLYADYRKIRVRTKQGWEIVRVDEFIDELLTSDYSCDIALPRLPKRWHLEDAGMIPPRMNHAEDDLE--DDEDVAVKGEEEEGEE 207

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: UPI00035A1445 (pre-mRNA-splicing factor 38A n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A1445)

HSP 1 Score: 109 bits (272), Expect = 2.970e-24
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTG-YMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEE 92
            GA Y+RL G+ V+ Y+YLEPLYYDYRKLK+    G + VVHMDEYIDELL E   C I LP + +R+VLE+ N LEPRVS ++ED+E  ++EE
Sbjct:  103 GATYMRLTGTSVDCYKYLEPLYYDYRKLKRMDRNGAFHVVHMDEYIDELLREERICDIILPRVQKRYVLEETNVLEPRVSAVEEDIEEGESEE 195

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A7S2CHG8_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHG8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.880e-24
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTGYMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEEA 93
            GAFYLRLVG PV+IY+YLE LY D+RK++ RT  G+ +V +DE+IDELL + + C IALP LP+RW LE+ + L PR SL  EDL+ E  +EA
Sbjct:  103 GAFYLRLVGKPVDIYKYLELLYNDFRKIRHRTHQGWELVRVDEFIDELLTKDYACDIALPHLPKRWSLEELSMLPPRKSLAVEDLDDESDDEA 195

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: A0A0R3T8F5_RODNA (Pre-mRNA-splicing factor 38 n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3T8F5_RODNA)

HSP 1 Score: 107 bits (267), Expect = 4.960e-24
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTG-YMVVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEEA--KKKAERSDGSD 104
            GAFYLRLVG  VEIY+YLE LY D+RKLK++  TG + ++ MDE+ID+LL E   C + LP L +R VLED+N LEPR S+LDEDLE  +  EA   ++ E  DG D
Sbjct:  103 GAFYLRLVGDSVEIYKYLEALYNDFRKLKQQDTTGKFSIIRMDEFIDQLLNEERACDVILPRLQKRSVLEDSNLLEPRQSILDEDLEDINLNEALEDEQQESDDGKD 209

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BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Match: UPI000B8C7BF8 (pre-mRNA-splicing factor 38 isoform X1 n=2 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C7BF8)

HSP 1 Score: 108 bits (271), Expect = 8.740e-24
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 0

Query:    1 GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTGYM-VVHMDEYIDELLWETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLERE 88
            GAFYLRL G+ +++Y+YLEPLY DYRKL+K+ D GY  +VH+DE IDELL + + C+IALP + +RW LE    LEPR S+L++D E E
Sbjct:  103 GAFYLRLTGTDIDVYRYLEPLYNDYRKLRKKQDDGYFTLVHVDEVIDELLTKDYSCNIALPRIKKRWTLESLGTLEPRKSVLEDDFEEE 191

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig82627.19313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D6R633_ARACU	7.720e-25	58.43	Pre-mRNA-splicing factor 38 n=2 Tax=Araucariaceae ...	[more]
A0A210Q089_MIZYE	1.590e-24	58.89	Pre-mRNA-splicing factor 38 n=2 Tax=Pectinidae Tax...	[more]
A0A1Y1HWA0_KLENI	2.400e-24	58.06	Pre-mRNA-splicing factor 38 n=1 Tax=Klebsormidium ...	[more]
W7TQL1_9STRA	2.600e-24	62.07	Pre-mRNA-splicing factor 38 n=2 Tax=Monodopsidacea...	[more]
A0A1Y2G9Y0_9FUNG	2.760e-24	59.05	Pre-mRNA-splicing factor 38 n=1 Tax=Lobosporangium...	[more]
A0A7S2W3S8_9STRA	2.920e-24	53.85	Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulin...	[more]
UPI00035A1445	2.970e-24	59.14	pre-mRNA-splicing factor 38A n=1 Tax=Aplysia calif...	[more]
A0A7S2CHG8_9STRA	4.880e-24	58.06	Pre-mRNA-splicing factor 38 n=1 Tax=Dictyocha spec...	[more]
A0A0R3T8F5_RODNA	4.960e-24	56.07	Pre-mRNA-splicing factor 38 n=1 Tax=Rodentolepis n...	[more]
UPI000B8C7BF8	8.740e-24	57.30	pre-mRNA-splicing factor 38 isoform X1 n=2 Tax=Car...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..100
None	No IPR available	PANTHER	PTHR23142:SF1	PRE-MRNA-SPLICING FACTOR 38A	coord: 1..242
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 1..71 e-value: 1.6E-17 score: 64.0
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig82627	contig	M-pyrifera_M_contig82627:53..908 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig82627.19313.1	mRNA_M-pyrifera_M_contig82627.19313.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig82627 53..908 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig82627.19313.1 ID=prot_M-pyrifera_M_contig82627.19313.1|Name=mRNA_M-pyrifera_M_contig82627.19313.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=267bp
GAFYLRLVGSPVEIYQYLEPLYYDYRKLKKRTDTGYMVVHMDEYIDELLW
ETHCCSIALPFLPRRWVLEDANQLEPRVSLLDEDLEREDAEEAKKKAERS
DGSDSDSDLERSYKERSRREVSPPPPRWRRSKSERDRRSRSRSRSRSPGR
RRSHSRDSGRKRRYSSSSPDRHSRRERSRRDDYDRDDYDRRRRSSRSDRY
RDEDSSRSGRRSGEDRHRGRYSSDKRRSERNEPSESGGGGKKGNSESMSV
DETNALRAKLGLPPLK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005037	PRP38