prot_M-pyrifera_M_contig82576.19301.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig82576.19301.1
Unique Nameprot_M-pyrifera_M_contig82576.19301.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length95
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A8E2ARJ5_9APHY (Bromodomain-containing protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2ARJ5_9APHY)

HSP 1 Score: 60.5 bits (145), Expect = 1.350e-8
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:   17 MRTAVTEDGRVAAEQLMRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDSQ 92
            ++ AV ++GRV +   MRLPS+ + P YYE++ +P++L ++  +L A AY+S E  + D E  F N + +  R+SQ
Sbjct:   77 VKDAVNKEGRVLSHDFMRLPSKRQYPDYYEIIKRPISLDEIKVQLDAEAYTSLEDVKKDLETCFRNAKRYNIRESQ 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: UPI000440991C (Bromodomain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI000440991C)

HSP 1 Score: 58.9 bits (141), Expect = 4.310e-8
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0 
Query:   17 MRTAVTEDGRVAAEQLMRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDSQ 92
            +R AV  +GR  +   +RL S+ + P YYE++ QP+AL D+ A+L + AY S EA + D +  F N + +  R+S+
Sbjct:   77 LRDAVDREGRQISYDFLRLVSKRQFPDYYEIIKQPIALDDIKAQLESHAYPSLEALRQDLDTCFKNAKRYNQRESR 152
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BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V0V0X1_9BILA (Protein polybromo-1 n=1 Tax=Trichinella sp. T9 TaxID=181606 RepID=A0A0V0V0X1_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.470e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  668 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 726
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V0Y8H1_TRIPS (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0Y8H1_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.570e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  351 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 409
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V0Y7P0_TRIPS (Protein polybromo-1 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0Y7P0_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.630e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  666 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 724
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1K7N6_TRIPS (Protein polybromo-1 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1K7N6_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  679 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 737
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A1Y3EYG9_9BILA (Putative Bromodomain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EYG9_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  620 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 678
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1EMJ4_TRIPS (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1EMJ4_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  665 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 723
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1HBN3_9BILA (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HBN3_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  669 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 727
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1HBY0_9BILA (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HBY0_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   33 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 91
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  666 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 724
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E2ARJ5_9APHY1.350e-838.16Bromodomain-containing protein n=1 Tax=Obba rivulo... [more]
UPI000440991C4.310e-838.16Bromodomain-containing protein n=1 Tax=Fomitiporia... [more]
A0A0V0V0X1_9BILA6.470e-849.15Protein polybromo-1 n=1 Tax=Trichinella sp. T9 Tax... [more]
A0A0V0Y8H1_TRIPS6.570e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]
A0A0V0Y7P0_TRIPS6.630e-849.15Protein polybromo-1 n=1 Tax=Trichinella pseudospir... [more]
A0A0V1K7N6_TRIPS6.700e-849.15Protein polybromo-1 n=1 Tax=Trichinella pseudospir... [more]
A0A1Y3EYG9_9BILA6.700e-849.15Putative Bromodomain protein n=1 Tax=Trichinella n... [more]
A0A0V1EMJ4_TRIPS6.700e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]
A0A0V1HBN3_9BILA6.700e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]
A0A0V1HBY0_9BILA6.700e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 41..57
score: 30.31
coord: 75..94
score: 28.04
coord: 57..75
score: 24.14
IPR001487BromodomainSMARTSM00297bromo_6coord: 3..95
e-value: 1.4E-4
score: 30.5
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 28..93
e-value: 6.5E-14
score: 51.8
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 24..94
score: 13.12
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 3..95
e-value: 3.5E-21
score: 76.7
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 29..93
IPR027180Chromatin structure-remodeling complex subunit RSC1/RSC2/RSC4PANTHERPTHR16062:SF19POLYBROMOcoord: 3..93
IPR037382Remodelling complex subunit Rsc/polybromoPANTHERPTHR16062SWI/SNF-RELATEDcoord: 3..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82576contigM-pyrifera_M_contig82576:23..307 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82576.19301.1mRNA_M-pyrifera_M_contig82576.19301.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig82576 23..307 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig82576.19301.1 ID=prot_M-pyrifera_M_contig82576.19301.1|Name=mRNA_M-pyrifera_M_contig82576.19301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
EERQRLREVLAAAAERMRTAVTEDGRVAAEQLMRLPSRGEAPQYYEVVSQ
PLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDSQEVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR027180RSC1/2/4
IPR037382Rsc/polybromo