prot_M-pyrifera_M_contig8144.19048.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig8144.19048.1
Unique Nameprot_M-pyrifera_M_contig8144.19048.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length422
Homology
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BLAST of mRNA_M-pyrifera_M_contig8144.19048.1 vs. uniprot
Match: D7G6C1_ECTSI (RanBD1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C1_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 8.210e-49
Identity = 169/459 (36.82%), Postives = 217/459 (47.28%), Query Frame = 0 
Query:    1 GDRDAPEVIATRRKAKVSSRFRRTSTPTDAVTTAAPSAFAGMAGNPPKSGFVFGSMGATHKPAS---------TSTA---FSFGASTSGGTDGATTPTAFFA-----PXXXXXXXXXXXXXXXXXXXXXXXVAVAPKPPAGTIASGG-SGLAFGEGRTAAQGVRLNKLFARWIAHQLSTNSASTLDTGLRDYVAFAAEIRDRVEMLGENSESVAGASFTHPSASTAITSEAVPSVNPSAPXXXXXXXXXXXXXXXXPIXAPXXXXXXXATAMPAFTFSSPSTLPAAPS-------------------GRQFSFGLQTAAASTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGAAPGSVFSGFQAPAGVAFAPAAPAMAAGGAAAEAEDDGMPKEDPSKLERAPGEEDEEVVCHFRAKLYRFKLAEKSWGDLGTGLLRLMKHTTNGGRRLVLRNDMGK 422
            G+ D+ EVIA RRKA+VS RFR++     A T  APSAFAGMAG  P  GF +G+ GA+ +PA          TS A   F FG+    G       TA F+     P                        + +P   + T+ S    G AFGEG+TA QG RLNK F  W+++ L+      LD+G+R+Y A AAEIRDR       + +V+  +F HP  S A          PS                              +TA P+ T  + +  P   S                             A  ST                               G++ G+ F+GF+ P+GVA  P    +AAG +AA+AE+DGMPKEDPSKLERAPGEE+EEVV  FRAKL+RFK+ +K+WGD+G G+LRLMKHTTN  RRLVLRNDMGK
Sbjct:   21 GETDSQEVIANRRKARVSGRFRQSLEAKPATT--APSAFAGMAGITPNPGFDYGA-GASGRPAKNTFSLGAAPTSAAAGNFKFGSGEPAGGGSTGVATAGFSFLNKPPATTLAAALSKPPVMPKASSPPVPGSASPDTASSTLDSARWVGGAFGEGKTAVQGARLNKRFLSWVSNHLAEGELF-LDSGMREYAACAAEIRDRANHA--EAGAVSTTAFLHPRGSAAAVPPPQTVQKPSEDSISMAAEASV------------------STATPSVTAPASAPAPDVKSTXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPGSTPGALTSVAPPATSPLGGFKFDGGGLGAV---GSSAGA-FNGFKVPSGVAIPPP---VAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRAKLFRFKMEDKTWGDMGVGMLRLMKHTTNDSRRLVLRNDMGK 448
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BLAST of mRNA_M-pyrifera_M_contig8144.19048.1 vs. uniprot
Match: A0A7J7IFL1_9RHOD (Ran binding protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFL1_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 1.120e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  369 GEEDEEVVCHFRAKLYRFKLAEKSWGDLGTGLLRLMKHTTNGGRRLVLRND 419
            GEEDEE++  FRAKLYRF  A + W + GTG ++ ++H T G  RL++R  
Sbjct:  118 GEEDEEILAKFRAKLYRFDKAMREWKERGTGEIKFLRHQTTGRVRLLMRRQ 168
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BLAST of mRNA_M-pyrifera_M_contig8144.19048.1 vs. uniprot
Match: A0A7V5I8A7_9BACT (RanBD1 domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I8A7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 7.360e-5
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:  369 GEEDEEVVCHFRAKLYRFKLAEKSWGDLGTGLLRLMKHTTNGGRRLVLRND 419
            GEEDE+VV  +RAKLYRF  + + W + GTG ++ +KH  +G  RL++R  
Sbjct:  126 GEEDEDVVAKYRAKLYRFDKSMREWKERGTGEIKFLKHRVSGRIRLLMRRQ 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8144.19048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6C1_ECTSI8.210e-4936.82RanBD1 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7J7IFL1_9RHOD1.120e-549.02Ran binding protein n=1 Tax=Cyanidiococcus yangmin... [more]
A0A7V5I8A7_9BACT7.360e-547.06RanBD1 domain-containing protein n=2 Tax=cellular ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 255..422
e-value: 6.4E-16
score: 60.7
IPR000156Ran binding domainPFAMPF00638Ran_BP1coord: 369..419
e-value: 3.5E-10
score: 40.2
IPR000156Ran binding domainPROSITEPS50196RANBD1coord: 361..419
score: 14.236
NoneNo IPR availablePANTHERPTHR23138RAN BINDING PROTEINcoord: 10..422
NoneNo IPR availablePANTHERPTHR23138:SF141NUCLEAR PORE COMPLEX PROTEIN NUP50coord: 10..422
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 358..419

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8144contigM-pyrifera_M_contig8144:3187..7292 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8144.19048.1mRNA_M-pyrifera_M_contig8144.19048.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig8144 3187..7292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig8144.19048.1 ID=prot_M-pyrifera_M_contig8144.19048.1|Name=mRNA_M-pyrifera_M_contig8144.19048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=422bp
GDRDAPEVIATRRKAKVSSRFRRTSTPTDAVTTAAPSAFAGMAGNPPKSG
FVFGSMGATHKPASTSTAFSFGASTSGGTDGATTPTAFFAPTPAAAVFSP
PPAASVLEPTPAAAVAVAPKPPAGTIASGGSGLAFGEGRTAAQGVRLNKL
FARWIAHQLSTNSASTLDTGLRDYVAFAAEIRDRVEMLGENSESVAGASF
THPSASTAITSEAVPSVNPSAPPTAAAATPARLAAVPAPIAAPAPVPAPV
ATAMPAFTFSSPSTLPAAPSGRQFSFGLQTAAASTKAAGAPAIIAPSATS
PAPTGFKLNGVGLGGFGAAPGSVFSGFQAPAGVAFAPAAPAMAAGGAAAE
AEDDGMPKEDPSKLERAPGEEDEEVVCHFRAKLYRFKLAEKSWGDLGTGL
LRLMKHTTNGGRRLVLRNDMGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
IPR000156Ran_bind_dom