prot_M-pyrifera_M_contig8095.18929.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig8095.18929.1
Unique Nameprot_M-pyrifera_M_contig8095.18929.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length667
Homology
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BLAST of mRNA_M-pyrifera_M_contig8095.18929.1 vs. uniprot
Match: D7FQT1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.070e-36
Identity = 90/173 (52.02%), Postives = 111/173 (64.16%), Query Frame = 0 
Query:  503 VLRQSQEIKLSKPDPCSLSAAIEICCHAGELEHARNILPHLKALSGSEGADAWLRDTMDILDACSDDKQAGDEAAQPGDGDATNRTSGGQEGHQACT------AVESEKSHRSRSARPV---GVAEGVAFPEEVHRLSPLGGGVGKVAKAARRRTTDVAPDLLVKLSHGGTTT 666
            VLRQSQ++K SKPDPCSL AA+E+CC AG+L+HAR ILPHL AL+G+EGADAW+R+TM I +AC  D +A +E A  G+ D   R     +   A T      A   E++++ R  RP    G  E     +EVH+L PLGG VG     ARR  TD APDLLVKLSHGG  T
Sbjct:  348 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEAREEPAVNGNEDDELRPPASDDKTIAITGDLNTQAASGEETNQQRRGRPKLSKGPTERAVPFKEVHQLHPLGGAVGGKVGEARRLATDHAPDLLVKLSHGGNAT 520
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BLAST of mRNA_M-pyrifera_M_contig8095.18929.1 vs. uniprot
Match: A0A6H5JTI3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI3_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.130e-36
Identity = 89/174 (51.15%), Postives = 108/174 (62.07%), Query Frame = 0 
Query:  503 VLRQSQEIKLSKPDPCSLSAAIEICCHAGELEHARNILPHLKALSGSEGADAWLRDTMDILDACSDDKQA----------GDEAAQPGDGDATNRTSGGQEGHQACTAVESEKSHRSRSARPVGVAEGVAFPEEVHRLSPLGGGVGKVAKAARRRTTDVAPDLLVKLSHGGTTT 666
            VLRQSQ++K SKPDPCSL AA+E+CC AG+L+HAR ILPHL AL+G+EGADAW+R+TM I +AC  D +A          GDE   P   D T   +G    H A +  E+ +  R R     G  E     +EVH+L PLGG VG     ARR  TD APD+LVKLSHGG  T
Sbjct:  656 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEARDEPPINGNEGDELRPPASDDKTIAITGDLNTH-AASGEETNQQRRGRPKLSKGPTERAVPFKEVHQLHPLGGAVGGKVGEARRLATDHAPDVLVKLSHGGNAT 828
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8095.18929.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQT1_ECTSI1.070e-3652.02PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTI3_9PHAE7.130e-3651.15PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 392..505
e-value: 1.0E-7
score: 31.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..151
e-value: 1.3E-39
score: 138.4
coord: 152..302
e-value: 5.8E-37
score: 129.7
coord: 400..612
e-value: 2.2E-27
score: 98.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 303..371
e-value: 5.5E-9
score: 37.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 343..375
e-value: 0.001
score: 17.1
coord: 448..479
e-value: 8.5E-6
score: 23.6
coord: 385..411
e-value: 7.2E-4
score: 17.6
coord: 237..270
e-value: 1.4E-8
score: 32.4
coord: 200..229
e-value: 4.8E-5
score: 21.3
coord: 309..339
e-value: 0.003
score: 15.6
coord: 14..48
e-value: 2.8E-5
score: 22.0
coord: 49..82
e-value: 2.7E-7
score: 28.3
coord: 119..148
e-value: 0.0015
score: 16.6
coord: 84..117
e-value: 6.5E-8
score: 30.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 35..95
e-value: 2.0E-8
score: 34.2
coord: 105..168
e-value: 8.4E-4
score: 19.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 234..281
e-value: 9.9E-8
score: 32.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 200..229
e-value: 8.5E-5
score: 22.6
coord: 343..371
e-value: 0.03
score: 14.6
coord: 308..336
e-value: 0.49
score: 10.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 9.69
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 9.032
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 11.192
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 156..190
score: 7.991
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 480..514
score: 5.24
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 8.934
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 235..269
score: 12.803
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 10.775
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 117..151
score: 8.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..546
score: 6.204
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 47..81
score: 11.027
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 12..46
score: 10.534
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 9.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 198..232
score: 10.556
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 196..398
coord: 10..182
coord: 339..547

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8095contigM-pyrifera_M_contig8095:3384..11745 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8095.18929.1mRNA_M-pyrifera_M_contig8095.18929.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig8095 3384..11745 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig8095.18929.1 ID=prot_M-pyrifera_M_contig8095.18929.1|Name=mRNA_M-pyrifera_M_contig8095.18929.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=667bp
QDSARNEKVILSRVVYNKAVISLAKSGRWREAITLVENMRGDGLTPDEYS
YAGCIDACAKAMQWKKACQLLDEMRAAGVQPNGYAFNAAINACGKAHMWE
EALALLQQMQREGVEITTVTLNAAMDACGISGEWRAALTMLESMQSKDSP
QRQRPNSRTFNIAIKACAKVAEWQTALDLLAQLRAGAVAKGGEPLLADTV
SFNATINALGRGGEWKKALALLREMSKAGGDVAPNAISYNSAIHACGRGG
QWQLALSLLKEMRELGLPPDQVSFGATANALGRAGQWMLVLELLKEMKAD
GNPPTEVAFKAAVDCCSKADEWQHAVALIQSMRVNGYPPAVLTLSSVIAA
CGRAGQWEVALALLHDTRKRGPLPTASVYIATAQACARAGKWEEATELKE
GMEEDGVRPTEKFYMALLRATGEGNRTDKTIHILQEMREAGLTPGVRSYN
CAVGACGKAGSWQRAITLLSEMYREGMRPAGFAVAATIRACGAGGEWRQG
LQVLRQSQEIKLSKPDPCSLSAAIEICCHAGELEHARNILPHLKALSGSE
GADAWLRDTMDILDACSDDKQAGDEAAQPGDGDATNRTSGGQEGHQACTA
VESEKSHRSRSARPVGVAEGVAFPEEVHRLSPLGGGVGKVAKAARRRTTD
VAPDLLVKLSHGGTTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat