prot_M-pyrifera_M_contig80496.18855.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig80496.18855.1
Unique Nameprot_M-pyrifera_M_contig80496.18855.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length209
Homology
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A517WER1_9PLAN (ECF RNA polymerase sigma factor SigD n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517WER1_9PLAN)

HSP 1 Score: 390 bits (1001), Expect = 1.070e-136
Identity = 203/208 (97.60%), Postives = 207/208 (99.52%), Query Frame = 0
Query:    1 MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLLGG 208
            MAADIE LIQ+IQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGG+GAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIA+QLGKSDVAVRVLVSRAMAKLQ+QLKQEDEFKSLLGG
Sbjct:    1 MAADIEALIQQIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGEGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIAEQLGKSDVAVRVLVSRAMAKLQDQLKQEDEFKSLLGG 208          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A518A867_9PLAN (ECF RNA polymerase sigma factor SigD n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A867_9PLAN)

HSP 1 Score: 370 bits (950), Expect = 9.750e-129
Identity = 188/207 (90.82%), Postives = 201/207 (97.10%), Query Frame = 0
Query:    1 MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLLG 207
            MA DIEEL+++IQQGSEPALLEFLE+HR PLLAFINKNMSD LKSKVEA DILQEVSLNAVS+F+EFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGRE+RQPAGGDG GQGFMD+LVAS+TSPSQAFSRGA+EMKLLTALE+LPEESREAIRLKYVEGLNSSEIA+Q+GKSDVAVRVLVSRAMAKLQE LKQEDEFKSLLG
Sbjct:   12 MATDIEELVRQIQQGSEPALLEFLEVHRTPLLAFINKNMSDTLKSKVEATDILQEVSLNAVSSFAEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREVRQPAGGDGEGQGFMDILVASLTSPSQAFSRGAKEMKLLTALETLPEESREAIRLKYVEGLNSSEIAEQMGKSDVAVRVLVSRAMAKLQEILKQEDEFKSLLG 218          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A518IE76_9PLAN (ECF RNA polymerase sigma factor SigD n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IE76_9PLAN)

HSP 1 Score: 328 bits (842), Expect = 1.820e-112
Identity = 168/207 (81.16%), Postives = 186/207 (89.86%), Query Frame = 0
Query:    1 MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLLG 207
            M  DIE LI +I+QGSEPALLEF+E HRAPLLAFINKNMSD LKSKVEA DILQEVSLNAV + S+ DFE+KTPFNWLCHL+ERRIIDNHRKYFQVQKRAAGRE++Q +  DG GQGFMDLL+AS+TSPSQAFSRGA+EMKLL ALESLPEE+REAIRLKYVEGL + EIA QLGKSDVAVRV+VSR+M KLQE LK EDEFKS+LG
Sbjct:    1 MTTDIEVLISQIKQGSEPALLEFIEAHRAPLLAFINKNMSDGLKSKVEATDILQEVSLNAVESLSQIDFEQKTPFNWLCHLSERRIIDNHRKYFQVQKRAAGREVKQRSPSDGEGQGFMDLLIASITSPSQAFSRGAKEMKLLLALESLPEENREAIRLKYVEGLPTKEIAAQLGKSDVAVRVMVSRSMVKLQEILKHEDEFKSMLG 207          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A517XDJ0_9PLAN (ECF RNA polymerase sigma factor SigH n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XDJ0_9PLAN)

HSP 1 Score: 323 bits (829), Expect = 1.680e-110
Identity = 167/207 (80.68%), Postives = 182/207 (87.92%), Query Frame = 0
Query:    1 MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLLG 207
            M  DIE L+Q I+ GSEPALL FLE HRAPLLAFINKNMSDALKSKVEA DILQEVSLNAV +F   DFE+K PFNWLCHLAERRIIDNHRK+FQVQKRAAGRE RQP   +GAGQGFMDLLVAS+TSPSQAFSRGAREMKLL ALE LPEE+REAIRLKYVEG+ + EIA+QL KS+VAVRV++SR+M KLQE LK EDEFKSLLG
Sbjct:    1 MTTDIEILVQEIKAGSEPALLTFLERHRAPLLAFINKNMSDALKSKVEAADILQEVSLNAVDSFKSMDFEQKPPFNWLCHLAERRIIDNHRKFFQVQKRAAGREARQPVSAEGAGQGFMDLLVASITSPSQAFSRGAREMKLLLALERLPEEAREAIRLKYVEGIPTKEIAEQLDKSEVAVRVMISRSMVKLQELLKHEDEFKSLLG 207          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A517VVS7_9PLAN (ECF RNA polymerase sigma factor SigD n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VVS7_9PLAN)

HSP 1 Score: 300 bits (768), Expect = 3.500e-101
Identity = 152/206 (73.79%), Postives = 178/206 (86.41%), Query Frame = 0
Query:    1 MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLL 206
            M  DIE LI +I++G+EPALL+F+E+HR PL+AFINKNMSD LKSKVEA DILQEVSL+AV + S+ DFE K PF WLCHLA+++IIDNHRKYFQ QKRAAGRE++Q +  DG  QGFMDLL+AS+TSPSQAFSRGA+EMKLL ALESL EE+REAIRLKYVEGL + EIA  L K+DVAVRV+VSR+MAKLQE LK EDEFKS+L
Sbjct:    1 MTTDIEVLINQIKEGNEPALLKFMEMHRDPLMAFINKNMSDGLKSKVEAADILQEVSLSAVQSLSKMDFEHKPPFGWLCHLADQKIIDNHRKYFQAQKRAAGREVKQQSASDGENQGFMDLLIASITSPSQAFSRGAKEMKLLVALESLAEENREAIRLKYVEGLPTKEIATHLNKTDVAVRVMVSRSMAKLQEILKNEDEFKSML 206          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A517QTI0_9PLAN (ECF RNA polymerase sigma factor SigD n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QTI0_9PLAN)

HSP 1 Score: 204 bits (520), Expect = 2.510e-63
Identity = 105/204 (51.47%), Postives = 143/204 (70.10%), Query Frame = 0
Query:    4 DIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDG-AGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLL 206
            D   LI+RI+Q    AL EF+E+ R  LLAFI+K +SD L+ K+EA+DI Q++S++ + +F   DFE + PF WLC  AERRIID HR +F  QKRAA RE+     G G  G G  + L ASMTSPS AFSR  +E  L  ALE LP+E+REA++L+Y++G+ S EIA+Q+GKSD A RVL+SR++ ++QE L +   F++LL
Sbjct:   14 DANHLIERIRQKDRDALAEFIELRRPQLLAFIDKRLSDRLRKKIEASDIFQDLSMSCLGSFESVDFEGRDPFRWLCQQAERRIIDAHRHHFGAQKRAANREVGIHGAGPGNEGAGIENDLAASMTSPSAAFSRNQKEFFLAEALEQLPDEAREALKLRYLQGMQSKEIAEQIGKSDAATRVLLSRSLKRMQEMLSENVAFQTLL 217          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A5C6BIU6_9PLAN (ECF RNA polymerase sigma factor SigD n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A5C6BIU6_9PLAN)

HSP 1 Score: 203 bits (516), Expect = 7.140e-63
Identity = 106/195 (54.36%), Postives = 146/195 (74.87%), Query Frame = 0
Query:    7 ELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREI--RQPAGGDGA--GQG-FMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQL 196
            +L++R++QG   AL EF+E+ R  LLAFIN+N+S AL SKVE ND+LQEV+++A+    + +F+ + PFNWLC +AERRIID HRKY   QKR+A +E+    P GG  +  GQG  +D+LV +MT+PSQAFSR  RE KL   L +LP ES+EA+RL+YVEGL + EIA ++GK+D +VRVL+SR++ KLQ+ L
Sbjct:    7 QLVERVKQGDTDALGEFIELRRMQLLAFINRNVSSALASKVEPNDLLQEVTIHALRGLPDMEFKDRDPFNWLCQIAERRIIDAHRKYIGAQKRSANKEVSGNSPVGGTSSTTGQGGLIDMLVVTMTTPSQAFSRDQREFKLQEVLATLPAESQEALRLRYVEGLPTKEIAQKIGKTDGSVRVLLSRSLNKLQDLL 201          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A517ZE98_9PLAN (ECF RNA polymerase sigma factor SigD n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZE98_9PLAN)

HSP 1 Score: 201 bits (512), Expect = 3.170e-62
Identity = 110/201 (54.73%), Postives = 144/201 (71.64%), Query Frame = 0
Query:    8 LIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIR--QPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKSLL 206
            LI R++ G   AL   +E     LLAFI K MS  L+ KVE +DILQE++++A++     DF  + PF+WLC  AERRIID HR++F  QKRAA REI   +P GG+G G    DLLVASMTSPS AFSR  +E  +L AL SLPE++REA+RL+Y+EGL S EIA++LGK+D A RVL+SR+++KLQ+ L Q  +F+SLL
Sbjct:    7 LIDRVRSGDREALATLIEQKTPQLLAFIEKRMSGGLRRKVEPDDILQELTVSALNGLEGVDFGAQRPFSWLCQQAERRIIDAHRRHFGAQKRAADREIGIDRPIGGEGGG--IADLLVASMTSPSSAFSRKQKEYHMLEALASLPEDAREALRLRYLEGLPSKEIAERLGKTDGATRVLLSRSLSKLQDVLSQNTDFQSLL 205          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A5C5X460_9PLAN (ECF RNA polymerase sigma factor SigK n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X460_9PLAN)

HSP 1 Score: 198 bits (503), Expect = 7.800e-61
Identity = 99/205 (48.29%), Postives = 149/205 (72.68%), Query Frame = 0
Query:    1 MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDG-AGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQEDEFKS 204
            MA+D+E LI RI+   E AL E++++HR+ LLAFI++ M +AL+ KV+  D+LQEVS++ +S     D   + PF WLC  AERRIID HR++F  +KR+A RE+   +  DG + +G  D L+AS T+PS AFS+G +E+ L TA+E L E+++ A+RL+Y++GL S EIA +LGKSD +VR+L+SR++ KLQ+ L + +EF++
Sbjct:    1 MASDLEALISRIRDHDEAALAEYVDLHRSQLLAFIDRRMREALRKKVDPVDVLQEVSVSCLSALKTIDLNNRDPFRWLCQQAERRIIDEHRRHFGAKKRSAHREVLLNSPRDGWSEKGLEDFLIASFTTPSHAFSKGQKELHLGTAMEQLSEDAQVALRLRYLDGLPSKEIATRLGKSDASVRILLSRSLKKLQKILSENEEFQT 205          
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Match: A0A7C4UYK1_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4UYK1_9BACT)

HSP 1 Score: 192 bits (488), Expect = 8.820e-59
Identity = 105/192 (54.69%), Postives = 136/192 (70.83%), Query Frame = 0
Query:    7 ELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEANDILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRAAGREIRQPAGGDGAGQ-GFMDLLVASMTSPSQAFSRGAREMKLLTALESLPEESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLK 197
            EL++R+Q     AL  FLE ++  LL +I KN+  AL+SK+E  DI+QEV L A+    E DF ++ P NWLCHLAE+RIID +RK F  QKR+A RE+    GGD + + G  DLL ASMT+ SQAFSR  ++ +LL ALE LP E REA+RL+YVE L S EIA +LGKSD AVRVL++R++ KLQE L+
Sbjct:    7 ELLERLQARDSDALAMFLEANKHRLLGYIEKNLGTALRSKLEPADIVQEVCLQALRLLPEADFSQRDPLNWLCHLAEQRIIDAYRKLFGAQKRSAHREVNLAGGGDRSEEAGLADLLAASMTTASQAFSRNEKQFRLLAALELLPPEGREALRLRYVENLPSREIARRLGKSDGAVRVLLTRSVRKLQEILQ 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80496.18855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WER1_9PLAN1.070e-13697.60ECF RNA polymerase sigma factor SigD n=8 Tax=Gimes... [more]
A0A518A867_9PLAN9.750e-12990.82ECF RNA polymerase sigma factor SigD n=5 Tax=Gimes... [more]
A0A518IE76_9PLAN1.820e-11281.16ECF RNA polymerase sigma factor SigD n=2 Tax=Gimes... [more]
A0A517XDJ0_9PLAN1.680e-11080.68ECF RNA polymerase sigma factor SigH n=8 Tax=Planc... [more]
A0A517VVS7_9PLAN3.500e-10173.79ECF RNA polymerase sigma factor SigD n=2 Tax=Gimes... [more]
A0A517QTI0_9PLAN2.510e-6351.47ECF RNA polymerase sigma factor SigD n=1 Tax=Thala... [more]
A0A5C6BIU6_9PLAN7.140e-6354.36ECF RNA polymerase sigma factor SigD n=3 Tax=Symma... [more]
A0A517ZE98_9PLAN3.170e-6254.73ECF RNA polymerase sigma factor SigD n=1 Tax=Maior... [more]
A0A5C5X460_9PLAN7.800e-6148.29ECF RNA polymerase sigma factor SigK n=1 Tax=Thala... [more]
A0A7C4UYK1_9BACT8.820e-5954.69Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 34..92
e-value: 9.7E-6
score: 25.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 124..202
e-value: 1.4E-16
score: 61.7
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 140..192
e-value: 1.9E-15
score: 56.3
NoneNo IPR availableGENE3D1.10.1740.10coord: 4..91
e-value: 1.7E-10
score: 42.7
NoneNo IPR availablePANTHERPTHR30385SIGMA FACTOR F FLAGELLARcoord: 4..201
NoneNo IPR availablePANTHERPTHR30385:SF8coord: 4..201
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 22..196
e-value: 3.7E-26
score: 89.7
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 4..95
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 112..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80496contigM-pyrifera_M_contig80496:305..931 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80496.18855.1mRNA_M-pyrifera_M_contig80496.18855.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig80496 305..931 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig80496.18855.1 ID=prot_M-pyrifera_M_contig80496.18855.1|Name=mRNA_M-pyrifera_M_contig80496.18855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
MAADIEELIQRIQQGSEPALLEFLEIHRAPLLAFINKNMSDALKSKVEAN
DILQEVSLNAVSTFSEFDFEKKTPFNWLCHLAERRIIDNHRKYFQVQKRA
AGREIRQPAGGDGAGQGFMDLLVASMTSPSQAFSRGAREMKLLTALESLP
EESREAIRLKYVEGLNSSEIADQLGKSDVAVRVLVSRAMAKLQEQLKQED
EFKSLLGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR036388WH-like_DNA-bd_sf
IPR013249RNA_pol_sigma70_r4_t2
IPR014284RNA_pol_sigma-70_dom
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like