prot_M-pyrifera_M_contig80492.18852.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig80492.18852.1
Unique Nameprot_M-pyrifera_M_contig80492.18852.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length192
Homology
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: L8H8M4_ACACA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8M4_ACACA)

HSP 1 Score: 153 bits (386), Expect = 6.770e-42
Identity = 76/166 (45.78%), Postives = 107/166 (64.46%), Query Frame = 0
Query:    2 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 167
            V+SRDL+WEP  GQ  LF  DPPR    DI I +LRPGQ I+++ R  K  G +HAK+SPV+TA Y++ P +  V+  +G+E    ++LV +CPM VF+IE+SGKA V ++  CTMCREC+RE  W   + L      F F++E+     PP+VL + A+ +  AK
Sbjct:  175 VYSRDLIWEPVGGQAELFADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAYYRLLPDIKFVKDFKGQE---AKKLVAKCPMNVFDIEDSGKAYVKNQRNCTMCRECIREDGWDKRIKLLRVKDHFIFSIESTG-ILPPNVLFEEAVKVFMAK 336          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A5A8E2J9_CAFRO (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2J9_CAFRO)

HSP 1 Score: 145 bits (365), Expect = 3.790e-38
Identity = 86/182 (47.25%), Postives = 108/182 (59.34%), Query Frame = 0
Query:    2 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG-----KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQKQVRAA 178
            V+SRD+ W PQ GQE  F   P     GDI + +L PGQ I L+A AVK  GADHAKFSPVATA+Y++AP V L    EG   ++   LV  CPMGVF+IE+ G     +AVVA    CTMCREC+R   W   V L   +  F F VE+   A P   LV+ AL + A K+R  ++ + AA
Sbjct:  155 VYSRDITWGPQGGQEERFADRPVEPVEGDIVLAKLLPGQTICLEAHAVKGTGADHAKFSPVATASYRLAPEVELP--GEGFVGDDARSLVATCPMGVFDIEDVGSSTGPRAVVAQPRACTMCRECLRPAGWAQRVRLRKVNDHFLFRVESTG-ALPAATLVEMALEIFAEKARNAKEALEAA 333          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 138 bits (347), Expect = 3.200e-36
Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 0
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 167
            +V+SRDL W PQ  QE  FGS  P  E  DI + +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P+V L+E+ EG +    + LV+ C +G+F+IE+ G    AVV  +  CTMCR C+REP+W   + L      F F+VE+V    P  +L++ AL +LA K
Sbjct:  147 SVYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTD---AKRLVEECQIGLFDIEDIGGVPTAVVKDQRACTMCRNCIREPSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLE-ALNVLAEK 310          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: UPI000644A843 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A843)

HSP 1 Score: 138 bits (347), Expect = 5.220e-36
Identity = 75/178 (42.13%), Postives = 109/178 (61.24%), Query Frame = 0
Query:    1 TVWSRDLVWEPQEGQEALFGSDP-PRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQKQVRA 177
            TV+S+DL W P E Q+ +F  D  PR    DIPI +LRPGQA+++Q    K+ G +H K+SPV TA+YK+ P +T+  +  GE+    E+L   CPM VF+IE+SG+A  A    CTMCREC+R+P  +P V L      F F++E+V    P   L K+A+ +L  K   ++  +R+
Sbjct:  188 TVYSKDLKWVPTEDQQEIFDEDDKPRPAVDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTASYKIMPLITVSPKVTGEK---AEKLKNSCPMKVFDIEDSGQAFAARPLNCTMCRECIRDPEMEPLVKLERIRDHFIFSIESVGTLEPKS-LFKQAIQILIDKCVTVENSLRS 361          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A2ER03_TRIVA (RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2ER03_TRIVA)

HSP 1 Score: 137 bits (344), Expect = 9.250e-36
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 0
Query:    2 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLL 164
            + S  LVW P EGQ   FG+  P     DIPIT++ PGQ I L  RA+K  G+DHAKF PV TA Y++ P + + +     E+++ ++L+ +CPMGVF+IE+S K VV    +CT CREC+R P+   +V+L  +   + FTVE+V    P +VLVK AL +L
Sbjct:  167 ILSSHLVWMPYEGQREKFGNVAPL--HADIPITKILPGQTIHLYCRAIKGIGSDHAKFQPVCTAFYRLVPSIQVKDEINSSEKKQ-QKLISKCPMGVFDIEDS-KLVVRSPRKCTTCRECIRNPSLAHYVSLGKEANHYEFTVESVG-VRPAYVLVKEALQIL 324          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A7S4PFF0_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PFF0_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 1.500e-35
Identity = 76/176 (43.18%), Postives = 106/176 (60.23%), Query Frame = 0
Query:    2 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGK----AVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAKSRLLQK 173
            ++S DLVW P   QE  F S P ++   DI +  L PGQ I L ARA K  G DH KFSPV TA Y++ P ++L       E+E  EELV++CPM VF+IE+ GK    AVV+    CT+CREC+REP WQP + ++ + + F FT+E+   A  P ++   AL +   K  +++K
Sbjct:  189 IYSGDLVWHPLGSQEEDFESTPIKMVHDDILLAILGPGQEIHLTARAEKGVGEDHVKFSPVCTAFYRILPEISL---NVDIEDELAEELVEKCPMRVFDIEDLGKTKKKAVVSRPRNCTVCRECIREPEWQPRIDISRNKQHFIFTIESTG-ALAPELIFHMALKVFLEKLEVIKK 360          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.530e-35
Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 0
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLL 164
            +V+SRDL W PQ  QE  FG+  P  E  DI I +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P V L E  EG++    + LV+ C MG+F+IE+ G    AVV  +  CTMCR C+REP W   + L      F F+VE+V    P  +L +   +L+
Sbjct:  156 SVYSRDLEWVPQGNQEERFGAIRPVHE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDD---AKRLVEECQMGLFDIEDMGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLPEALNVLM 317          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: M4C0R7_HYAAE (RPOLD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R7_HYAAE)

HSP 1 Score: 134 bits (336), Expect = 2.530e-35
Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 0
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVL 156
            +V+SRDL W PQ  QE  FG   P  E  DI I +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P+V L+E+ EG      + LV  C  GVF+IE+ G    AVV  E  CTMCR C+REP W   + L      F F++E+V    P  +L
Sbjct:   78 SVYSRDLEWVPQGNQEERFGLIRPVSE--DILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGVN---AKRLVDECRTGVFDIEDIGGVPTAVVKDERSCTMCRNCIREPGWNERIRLGRQSDHFIFSIESVGMIKPEELL 231          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 133 bits (334), Expect = 5.410e-34
Identity = 79/170 (46.47%), Postives = 103/170 (60.59%), Query Frame = 0
Query:    1 TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESG---KAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 167
            +V+SRDL W PQ  QE  FGS  P  E  DI I +LRPGQ+I L+A   K  G DHAKFSPVATA+Y++ P+V   E+ EG +    + LV+ C MG+F+IE+ G    AVV  +  CTMCR C+REP W   + L      F F+VE+V       +L + AL +LA K
Sbjct:  184 SVYSRDLEWVPQGNQEERFGSIRPVHE--DILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGAD---AKHLVEDCQMGLFDIEDIGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMMKAEELLPE-ALGVLAEK 347          
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Match: A0A7S2ZMZ7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMZ7_9RHOD)

HSP 1 Score: 133 bits (334), Expect = 5.510e-34
Identity = 77/166 (46.39%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    2 VWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVKSNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFEIEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEATPPHVLVKRALLLLAAK 167
            V+S  L W P   Q  +FGS PP+    DI I +LRPGQ I L+  AVK    DHAK+SPVATA Y+M P++ L++  EG +    +EL + CP   F+IEESGKAVV+  S CTMCREC+R   W   V L+     F F++E+   A  P  L  RAL +L  K
Sbjct:  178 VFSSMLEWVPIGEQAEVFGSKPPKPVNDDILIAKLRPGQEIDLEVLAVKGISKDHAKWSPVATAFYRMLPQIELLQSIEGAD---AKELKEMCPSNCFDIEESGKAVVSRPSTCTMCRECIRHGDWGEKVRLSRVRDHFIFSIESTG-AIAPEDLFMRALQVLVDK 339          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80492.18852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H8M4_ACACA6.770e-4245.78DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5A8E2J9_CAFRO3.790e-3847.25DNA-directed RNA polymerases I and III subunit RPA... [more]
D0NVB2_PHYIT3.200e-3646.47DNA-directed RNA polymerases I and III subunit RPA... [more]
UPI000644A8435.220e-3642.13hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A2ER03_TRIVA9.250e-3644.79RNA polymerase Rpb3/Rpb11 dimerisation domain cont... [more]
A0A7S4PFF0_9EUKA1.500e-3543.18Hypothetical protein n=2 Tax=Paramoeba aestuarina ... [more]
A0A662X4Y9_9STRA1.530e-3545.51DNA-directed RNA polymerases I and III subunit RPA... [more]
M4C0R7_HYAAE2.530e-3547.17RPOLD domain-containing protein n=1 Tax=Hyaloperon... [more]
H3GV90_PHYRM5.410e-3446.47DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2ZMZ7_9RHOD5.510e-3446.39Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 4..174
e-value: 1.1E-4
score: -17.7
NoneNo IPR availableGENE3D3.30.70.20coord: 71..132
e-value: 2.0E-16
score: 61.1
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 2..175
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 2..60
e-value: 1.0E-6
score: 29.1
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 1..57
e-value: 2.9E-12
score: 49.0
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 2..61
IPR033901DNA-directed RNA polymerases I and III subunit AC40PANTHERPTHR11800:SF13DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1coord: 2..175
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 91..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80492contigM-pyrifera_M_contig80492:277..906 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80492.18852.1mRNA_M-pyrifera_M_contig80492.18852.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig80492 277..906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig80492.18852.1 ID=prot_M-pyrifera_M_contig80492.18852.1|Name=mRNA_M-pyrifera_M_contig80492.18852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
TVWSRDLVWEPQEGQEALFGSDPPRVEFGDIPITRLRPGQAIKLQARAVK
SNGADHAKFSPVATAAYKMAPRVTLVERKEGEEEEEGEELVKRCPMGVFE
IEESGKAVVAHESRCTMCRECVREPAWQPHVALALDHRTFHFTVEAVSEA
TPPHVLVKRALLLLAAKSRLLQKQVRAARSDRGEGGEEEGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR036643RNApol_insert_sf
IPR033901RNAPI/II_AC40
IPR036603RBP11-like