prot_M-pyrifera_M_contig80234.18802.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig80234.18802.1
Unique Nameprot_M-pyrifera_M_contig80234.18802.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length80
Homology
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BLAST of mRNA_M-pyrifera_M_contig80234.18802.1 vs. uniprot
Match: A0A2E9VIV7_9PLAN (Uncharacterized protein n=1 Tax=Rubinisphaera sp. TaxID=2024857 RepID=A0A2E9VIV7_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 7.610e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0 
Query:    3 TTILSLVFCLQGCLGFSQKPE-LSSEQKLVIACHQLNVPAVVKLLNSGADVNARFGDEATTEHFQDPWFGGNPVTASQW 80
            T +LSLV  L+     S  PE LS +Q+L++AC+QL+   V KLLNSGADVNA++  +   E F+D W  G P   SQW
Sbjct:   10 TILLSLVSALRAEDNNSANPESLSVDQQLILACYQLDEDQVQKLLNSGADVNAKYLSKNFNELFRDRWTEGYPAAVSQW 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig80234.18802.1 vs. uniprot
Match: A0A5C5XKC9_9PLAN (Ankyrin repeats (3 copies) n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XKC9_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0 
Query:    7 SLVFCLQGCLGFSQKPELSSE-----QKLVIACHQLNVPAVVKLLNSGADVNARFGDEATTEHFQDPWFGGNPVTASQ 79
            +LVF L   L    K   +SE     Q+L++AC+QL+   V KLLNSGADVNA+   +   E F+D W  G P   SQ
Sbjct:   10 TLVFSLVSALCAEDKNSANSESLSVDQQLILACYQLDEVQVQKLLNSGADVNAKILSKNFKELFRDHWTQGTPGAISQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80234.18802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E9VIV7_9PLAN7.610e-1248.10Uncharacterized protein n=1 Tax=Rubinisphaera sp. ... [more]
A0A5C5XKC9_9PLAN1.830e-743.59Ankyrin repeats (3 copies) n=1 Tax=Rubinisphaera i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..80
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80234contigM-pyrifera_M_contig80234:711..950 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80234.18802.1mRNA_M-pyrifera_M_contig80234.18802.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig80234 711..950 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig80234.18802.1 ID=prot_M-pyrifera_M_contig80234.18802.1|Name=mRNA_M-pyrifera_M_contig80234.18802.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MRTTILSLVFCLQGCLGFSQKPELSSEQKLVIACHQLNVPAVVKLLNSGA
DVNARFGDEATTEHFQDPWFGGNPVTASQW
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