prot_M-pyrifera_M_contig78951.18547.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig78951.18547.1
Unique Nameprot_M-pyrifera_M_contig78951.18547.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length55
Homology
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BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-6
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 0 
Query:    1 MVEMG-ISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAK 38
            M+E+G ++PDVYTYSSLV+AYA+LG+V  AVK LSDM+K
Sbjct: 1002 MMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSK 1040
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78951.18547.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM8_ECTSI2.670e-669.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 1.5E-8
score: 32.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..54
e-value: 8.2E-11
score: 41.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 12.518
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..54
e-value: 2.1E-15
score: 58.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 3..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78951contigM-pyrifera_M_contig78951:435..599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78951.18547.1mRNA_M-pyrifera_M_contig78951.18547.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig78951 408..599 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig78951.18547.1 ID=prot_M-pyrifera_M_contig78951.18547.1|Name=mRNA_M-pyrifera_M_contig78951.18547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MVEMGISPDVYTYSSLVSAYAKLGEVAAAVKVLSDMAKGGVKPNGFTCSA
VMQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf