prot_M-pyrifera_M_contig7855.18457.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig7855.18457.1
Unique Name	prot_M-pyrifera_M_contig7855.18457.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	90

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.770e-43
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 0

Query:    1 MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPYTG 89
            MVA+GNMT++LL  F LEMVGGAAIFGAASGSGR PGDFG+DPLNLTSNP+KKAR+EL+EIQHCRLAM AI GIATQ+VLNGG FPYTG
Sbjct:  147 MVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.940e-26
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 0

Query:    1 MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            MV+ GNM +ML  A  LE++ GAAIF AA GSGR PGDF +DPL L  + +K AR++LSE+++ RLAM+A SGIATQ+VL G +FPY
Sbjct:  143 MVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPY 229

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.270e-18
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0

Query:    2 VAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            V+AG MT+M    F LE + G AI  + +GSGRA GD+G+DPL L+  P K A  ++ EI H RLAM+A SG+ TQ+VL    FPY
Sbjct:  128 VSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A6S9U0F0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9U0F0_CHRCT)

HSP 1 Score: 81.3 bits (199), Expect = 7.140e-17
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 0

Query:    2 VAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            VA+G+M+ +LL     E++   AI    +GSGRAPG+FG DP+    + SKKA  E+ E+ + RLAMMA SG+ TQ+VL G +FPY
Sbjct:  142 VASGSMSQLLLWIGIAEIISVVAIQQMLAGSGRAPGEFGFDPMGFAKDASKKADLEMKELANGRLAMMAFSGMVTQAVLTGNSFPY 227

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.570e-16
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0

Query:    1 MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTS-NPSKKARFELSEIQHCRLAMMAISGIATQSVLNG-GAFPY 87
            MVA G M ++LL A   E++GGAA++ AA GSGR PGDF +DP +L   +P +K  F+  EI++ RLAM+ ISGI TQ+ L G   FPY
Sbjct:  145 MVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPY 233

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S2CMP0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMP0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.460e-15
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 0

Query:    2 VAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            V +G MT M +    +E V   AI    +GSGR PGDF +DPL L S+P K     L EI H RLAM+A  G+ TQ+VL    FPY
Sbjct:  159 VKSGAMTFMFIAISLIETVSFLAIQEMLAGSGRKPGDFNLDPLQLASSPEKLETMLLKEITHARLAMLAFGGLVTQAVLTEKGFPY 244

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-14
Identity = 44/87 (50.57%), Postives = 51/87 (58.62%), Query Frame = 0

Query:    1 MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            MVA+GNM  MLL    LE++    +  AA GSGR  GDF  DPL  T        FE +EIQH RLAM+A SG+ TQS L    FPY
Sbjct:  132 MVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 4.120e-14
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 0

Query:    5 GNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            G M  +L+G  + E  G  AI     GSGRAPGDFG DPL  +  P K   +   EI + RLAM+A SGI TQS L   +FPY
Sbjct:  120 GAMQQLLMGIGWAETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEKAQEYATKEINNGRLAMLAFSGIVTQSALYENSFPY 202

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S2M995_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M995_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.440e-13
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0

Query:    5 GNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKAR-FELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            G M  +LL     E++ G AI     GSGRAPGDFG D   L     +     +L EI HCRLAM+A SG+ TQS+L  G FPY
Sbjct:  134 GGMAQLLLWFTLAEVIDGIAIVQMLEGSGRAPGDFGWDGGMLKGKSDEYVEDMKLKEITHCRLAMLAFSGVVTQSILTNGGFPY 217

[Close]

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S1FM28_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM28_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.660e-13
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 0

Query:    1 MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKA--RFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 87
            +V  G M  +LL     EM+G  AI     GSGR PGD+G+DPL L +  S+      +L E+++ RLAM+A SG+ TQ+VL GG FPY
Sbjct:  117 LVTNGAMGQLLLFIGLAEMIGWIAIAQMLQGSGREPGDYGLDPLQLIAGKSEAEVNEMKLRELKNGRLAMLAFSGVVTQAVLTGGPFPY 205

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G3A4_ECTSI	1.770e-43	83.15	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A836CGA6_9STRA	8.940e-26	59.77	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7S2S869_9STRA	1.270e-18	51.16	Hypothetical protein n=2 Tax=Rhizochromulina marin...	[more]
A0A6S9U0F0_CHRCT	7.140e-17	48.84	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]
A0A6V1NRI4_HETAK	1.570e-16	51.69	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2CMP0_9STRA	7.460e-15	47.67	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
F0YCE3_AURAN	1.890e-14	50.57	Uncharacterized protein LHC26 n=1 Tax=Aureococcus ...	[more]
A0A6V1QB66_HETAK	4.120e-14	48.19	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2M995_9STRA	1.440e-13	47.62	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S1FM28_9STRA	1.660e-13	46.07	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 31..78 e-value: 6.9E-13 score: 49.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 1..87 e-value: 2.6E-15 score: 58.8
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 20..88
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..34
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..34
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 35..89
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..22 score: 0.807
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 4..82
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 20..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig7855	contig	M-pyrifera_M_contig7855:8197..10400 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig7855.18457.1	mRNA_M-pyrifera_M_contig7855.18457.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig7855 8121..10491 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig7855.18457.1 ID=prot_M-pyrifera_M_contig7855.18457.1|Name=mRNA_M-pyrifera_M_contig7855.18457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNP
SKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPYTG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln