prot_M-pyrifera_M_contig78280.18400.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig78280.18400.1
Unique Name	prot_M-pyrifera_M_contig78280.18400.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	330

Homology

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BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: E3W0I4_PRUPE (DNA-directed RNA polymerase subunit beta' n=194 Tax=Mesangiospermae TaxID=1437183 RepID=E3W0I4_PRUPE)

HSP 1 Score: 670 bits (1729), Expect = 4.580e-238
Identity = 329/330 (99.70%), Postives = 330/330 (100.00%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 330
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 621

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BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A649ZAY5_9ROSA (DNA-directed RNA polymerase subunit beta' n=3 Tax=Maleae TaxID=721813 RepID=A0A649ZAY5_9ROSA)

HSP 1 Score: 656 bits (1692), Expect = 1.780e-232
Identity = 324/330 (98.18%), Postives = 327/330 (99.09%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 330
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSP+IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNY+YTKE  PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPSIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYEYTKE--PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 619

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BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A650B3D5_AROAR (DNA-directed RNA polymerase subunit beta' n=2 Tax=Aronia TaxID=193297 RepID=A0A650B3D5_AROAR)

HSP 1 Score: 655 bits (1691), Expect = 2.520e-232
Identity = 325/330 (98.48%), Postives = 326/330 (98.79%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 330
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNY YTKE  PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYWYTKE--PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 619

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BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A649ZF30_9ROSA (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dichotomanthes tristaniicarpa TaxID=193303 RepID=A0A649ZF30_9ROSA)

HSP 1 Score: 655 bits (1691), Expect = 2.520e-232
Identity = 324/330 (98.18%), Postives = 327/330 (99.09%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 330
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNY+YTKE  PFFCNSYDAIGAYRQKRINLDSPLWLRW+LDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYEYTKE--PFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVITSRET 619

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BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A6M4SQL3_9MAGN (DNA-directed RNA polymerase subunit n=3 Tax=cellular organisms TaxID=131567 RepID=A0A6M4SQL3_9MAGN)

HSP 1 Score: 647 bits (1668), Expect = 6.900e-231
Identity = 317/329 (96.35%), Postives = 321/329 (97.57%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 329
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLT GNRRGICANRYNPCNRRNYQ KRIDDNNY+YTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI SRE
Sbjct:  152 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTGGNRRGICANRYNPCNRRNYQTKRIDDNNYEYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRE 480

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BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A5Q0UU43_9FABA (DNA-directed RNA polymerase subunit (Fragment) n=3 Tax=Fabaceae TaxID=3803 RepID=A0A5Q0UU43_9FABA)

HSP 1 Score: 642 bits (1657), Expect = 1.270e-230
Identity = 315/329 (95.74%), Postives = 323/329 (98.18%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 329
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLI++HFASNIGVAKSKIREKEP+VW+IL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR GICANRYNPCNRRNY+N+RI DNNYKYTKEKEPFFCNSYDAIGAYRQKRIN DSPLWLRWRLDQ VI+SRE
Sbjct:   68 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIKKHFASNIGVAKSKIREKEPIVWQILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRGGICANRYNPCNRRNYKNERIYDNNYKYTKEKEPFFCNSYDAIGAYRQKRINFDSPLWLRWRLDQCVISSRE 396

[Close]

BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A2S1P4A6_HAMMO (DNA-directed RNA polymerase subunit beta' n=20 Tax=cellular organisms TaxID=131567 RepID=A0A2S1P4A6_HAMMO)

HSP 1 Score: 651 bits (1680), Expect = 1.350e-230
Identity = 319/329 (96.96%), Postives = 323/329 (98.18%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 329
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ KRIDDNNY+YTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI SRE
Sbjct:  292 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQTKRIDDNNYEYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRE 620

[Close]

BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A7U0KR86_9MAGN (DNA-directed RNA polymerase subunit beta' n=1 Tax=Loropetalum chinense var. rubrum TaxID=79783 RepID=A0A7U0KR86_9MAGN)

HSP 1 Score: 650 bits (1677), Expect = 3.610e-230
Identity = 317/329 (96.35%), Postives = 323/329 (98.18%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 329
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ KRIDDNNYKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+I SRE
Sbjct:  290 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRELAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQTKRIDDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASRE 618

[Close]

BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A2R3TVN9_9MAGN (DNA-directed RNA polymerase subunit beta' n=1 Tax=Loropetalum subcordatum TaxID=66699 RepID=A0A2R3TVN9_9MAGN)

HSP 1 Score: 649 bits (1675), Expect = 7.260e-230
Identity = 317/329 (96.35%), Postives = 322/329 (97.87%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 329
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ KRIDDNNYKYTK+KEPFFCNSYDAIGAYRQKRIN DSPLWLRWRLDQR+I SRE
Sbjct:  290 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQTKRIDDNNYKYTKKKEPFFCNSYDAIGAYRQKRINFDSPLWLRWRLDQRIIASRE 618

[Close]

BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: E5KU87_CORLA (DNA-directed RNA polymerase subunit beta' n=1 Tax=Corynocarpus laevigatus TaxID=4312 RepID=E5KU87_CORLA)

HSP 1 Score: 649 bits (1674), Expect = 1.260e-229
Identity = 317/329 (96.35%), Postives = 326/329 (99.09%), Query Frame = 0

Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 329
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIR+KEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNR+N+QN++IDDN+YKYTKEKEPFFCNSYDAIGAYRQKRI+LDSPLWLRWRLDQRVI SRE
Sbjct:  298 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIRQKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIDDNDYKYTKEKEPFFCNSYDAIGAYRQKRIHLDSPLWLRWRLDQRVIASRE 626

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
E3W0I4_PRUPE	4.580e-238	99.70	DNA-directed RNA polymerase subunit beta' n=194 Ta...	[more]
A0A649ZAY5_9ROSA	1.780e-232	98.18	DNA-directed RNA polymerase subunit beta' n=3 Tax=...	[more]
A0A650B3D5_AROAR	2.520e-232	98.48	DNA-directed RNA polymerase subunit beta' n=2 Tax=...	[more]
A0A649ZF30_9ROSA	2.520e-232	98.18	DNA-directed RNA polymerase subunit beta' n=1 Tax=...	[more]
A0A6M4SQL3_9MAGN	6.900e-231	96.35	DNA-directed RNA polymerase subunit n=3 Tax=cellul...	[more]
A0A5Q0UU43_9FABA	1.270e-230	95.74	DNA-directed RNA polymerase subunit (Fragment) n=3...	[more]
A0A2S1P4A6_HAMMO	1.350e-230	96.96	DNA-directed RNA polymerase subunit beta' n=20 Tax...	[more]
A0A7U0KR86_9MAGN	3.610e-230	96.35	DNA-directed RNA polymerase subunit beta' n=1 Tax=...	[more]
A0A2R3TVN9_9MAGN	7.260e-230	96.35	DNA-directed RNA polymerase subunit beta' n=1 Tax=...	[more]
E5KU87_CORLA	1.260e-229	96.35	DNA-directed RNA polymerase subunit beta' n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..253 e-value: 2.8E-124 score: 428.9
None	No IPR available	GENE3D	2.40.40.20		coord: 86..219 e-value: 4.0E-48 score: 165.0
None	No IPR available	GENE3D	1.10.40.90		coord: 109..157 e-value: 4.0E-48 score: 165.0
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..329
None	No IPR available	PANTHER	PTHR19376:SF45	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 1..329
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..318
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 1..81 e-value: 1.9E-16 score: 60.3
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 139..223 e-value: 1.5E-26 score: 93.6 coord: 83..130 e-value: 1.1E-7 score: 32.3
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100		coord: 228..329 e-value: 2.4E-10 score: 42.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig78280	contig	M-pyrifera_M_contig78280:1..990 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig78280.18400.1	mRNA_M-pyrifera_M_contig78280.18400.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig78280 1..990 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig78280.18400.1 ID=prot_M-pyrifera_M_contig78280.18400.1|Name=mRNA_M-pyrifera_M_contig78280.18400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=330bp
DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGI
RGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL
SLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEI
LHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADF
DGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAI
GAYRQKRINLDSPLWLRWRLDQRVITSRET

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006592	RNA_pol_N
IPR007080	RNA_pol_Rpb1_1
IPR000722	RNA_pol_asu
IPR042102	RNA_pol_Rpb1_3_sf