prot_M-pyrifera_M_contig77694.18276.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig77694.18276.1
Unique Nameprot_M-pyrifera_M_contig77694.18276.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length168
Homology
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BLAST of mRNA_M-pyrifera_M_contig77694.18276.1 vs. uniprot
Match: UPI001D11C15A (hypothetical protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D11C15A)

HSP 1 Score: 52.0 bits (123), Expect = 4.260e-5
Identity = 63/173 (36.42%), Postives = 81/173 (46.82%), Query Frame = 0 
Query:    1 MSVLLAPFLTLAIVLVVSGVDKLRRPDGAASALRSARMAAAVGPGSIPRSRRLARTMGALEAAIGVGAIAVPWATDRAVLGAIVALVVAAAFAGFAWFVSRLASIDATASCGCFGS-SSPPGPAHRRLNLAAAGVAVATAVA----TLATDQAADLGIIVDAGFGTSLAVLVL 168
            MS + A F    +VLVV+G  KL  P+  A  L S  +A    PG I R    ART+GA+E A+G+GA+                     AFA     V  LA      SCGCFG+ S+PP   H  +N+ +A VA+  AV       A D  A+LG     G G  +A LVL
Sbjct:    1 MSAVDALFWAACLVLVVAGASKLAAPEQVAGTLASLGLARPAAPGRI-RGIGTARTIGAVEVALGIGALXXXXXXXXXXXXXXXL-----AFA----VVVVLARRRGLESCGCFGARSAPPSWVHVAVNVGSAIVAIVAAVLDGGPVPAADGLAELG-----GTGVVVAALVL 158
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77694.18276.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D11C15A4.260e-536.42hypothetical protein n=1 Tax=Aquihabitans sp. Kera... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..99
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 100..168
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..77
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.836
NoneNo IPR availableTMHMMTMhelixcoord: 78..100
NoneNo IPR availableTMHMMTMhelixcoord: 4..20
NoneNo IPR availableTMHMMTMhelixcoord: 57..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77694contigM-pyrifera_M_contig77694:366..869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77694.18276.1mRNA_M-pyrifera_M_contig77694.18276.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig77694 366..869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig77694.18276.1 ID=prot_M-pyrifera_M_contig77694.18276.1|Name=mRNA_M-pyrifera_M_contig77694.18276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MSVLLAPFLTLAIVLVVSGVDKLRRPDGAASALRSARMAAAVGPGSIPRS
RRLARTMGALEAAIGVGAIAVPWATDRAVLGAIVALVVAAAFAGFAWFVS
RLASIDATASCGCFGSSSPPGPAHRRLNLAAAGVAVATAVATLATDQAAD
LGIIVDAGFGTSLAVLVL
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