mRNA_M-pyrifera_M_contig77694.18276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77694.18276.1
Unique NamemRNA_M-pyrifera_M_contig77694.18276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77694.18276.1 vs. uniprot
Match: UPI001D11C15A (hypothetical protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D11C15A)

HSP 1 Score: 52.0 bits (123), Expect = 4.260e-5
Identity = 63/173 (36.42%), Postives = 81/173 (46.82%), Query Frame = 1 
Query:    1 MSVLLAPFLTLAIVLVVSGVDKLRRPDGAASALRSARMAAAVGPGSIPRSRRLARTMGALEAAIGVGAIAVPWATDRAVLGAIVALVVAAAFAGFAWFVSRLASIDATASCGCFGS-SSPPGPAHRRLNLAAAGVAVATAVA----TLATDQAADLGIIVDAGFGTSLAVLVL 504
            MS + A F    +VLVV+G  KL  P+  A  L S  +A    PG I R    ART+GA+E A+G+GA+                     AFA     V  LA      SCGCFG+ S+PP   H  +N+ +A VA+  AV       A D  A+LG     G G  +A LVL
Sbjct:    1 MSAVDALFWAACLVLVVAGASKLAAPEQVAGTLASLGLARPAAPGRI-RGIGTARTIGAVEVALGIGALXXXXXXXXXXXXXXXL-----AFA----VVVVLARRRGLESCGCFGARSAPPSWVHVAVNVGSAIVAIVAAVLDGGPVPAADGLAELG-----GTGVVVAALVL 158
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77694.18276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D11C15A4.260e-536.42hypothetical protein n=1 Tax=Aquihabitans sp. Kera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77694contigM-pyrifera_M_contig77694:366..869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size504
Cds size504
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.8287933-CDS-M-pyrifera_M_contig77694:365..8691622816677.8287933-CDS-M-pyrifera_M_contig77694:365..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77694 366..869 +
1692278114.2542155-CDS-M-pyrifera_M_contig77694:365..8691692278114.2542155-CDS-M-pyrifera_M_contig77694:365..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77694 366..869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77694.18276.1prot_M-pyrifera_M_contig77694.18276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77694 366..869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77694.18276.1

>prot_M-pyrifera_M_contig77694.18276.1 ID=prot_M-pyrifera_M_contig77694.18276.1|Name=mRNA_M-pyrifera_M_contig77694.18276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
MSVLLAPFLTLAIVLVVSGVDKLRRPDGAASALRSARMAAAVGPGSIPRS
RRLARTMGALEAAIGVGAIAVPWATDRAVLGAIVALVVAAAFAGFAWFVS
RLASIDATASCGCFGSSSPPGPAHRRLNLAAAGVAVATAVATLATDQAAD
LGIIVDAGFGTSLAVLVL
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mRNA from alignment at M-pyrifera_M_contig77694:366..869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77694.18276.1 ID=mRNA_M-pyrifera_M_contig77694.18276.1|Name=mRNA_M-pyrifera_M_contig77694.18276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig77694:366..869+ (Macrocystis pyrifera P11B4 male)
ATGTCTGTCCTTCTGGCGCCCTTCCTCACGCTGGCGATCGTGCTGGTGGT
CAGCGGGGTCGACAAGCTCCGGCGACCCGACGGAGCAGCATCTGCCCTGC
GATCGGCTCGGATGGCCGCCGCGGTCGGACCGGGCTCGATCCCTCGGAGT
CGGCGACTCGCCCGAACGATGGGCGCGCTCGAAGCCGCCATCGGTGTCGG
CGCCATCGCCGTTCCCTGGGCCACCGACCGAGCCGTGCTCGGTGCGATCG
TCGCACTGGTCGTGGCCGCCGCCTTCGCCGGTTTCGCCTGGTTCGTCAGC
CGTCTGGCCTCCATCGATGCCACGGCTTCCTGCGGCTGCTTCGGTTCCAG
CTCACCCCCTGGCCCGGCTCACCGACGACTGAACCTCGCAGCAGCCGGCG
TGGCCGTGGCGACGGCCGTCGCCACGCTCGCGACCGACCAAGCTGCCGAC
CTCGGCATCATCGTCGACGCCGGGTTCGGAACCTCGCTCGCCGTACTCGT
GCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77694:366..869+

>mRNA_M-pyrifera_M_contig77694.18276.1 ID=mRNA_M-pyrifera_M_contig77694.18276.1|Name=mRNA_M-pyrifera_M_contig77694.18276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig77694:366..869+ (Macrocystis pyrifera P11B4 male)
ATGTCTGTCCTTCTGGCGCCCTTCCTCACGCTGGCGATCGTGCTGGTGGT
CAGCGGGGTCGACAAGCTCCGGCGACCCGACGGAGCAGCATCTGCCCTGC
GATCGGCTCGGATGGCCGCCGCGGTCGGACCGGGCTCGATCCCTCGGAGT
CGGCGACTCGCCCGAACGATGGGCGCGCTCGAAGCCGCCATCGGTGTCGG
CGCCATCGCCGTTCCCTGGGCCACCGACCGAGCCGTGCTCGGTGCGATCG
TCGCACTGGTCGTGGCCGCCGCCTTCGCCGGTTTCGCCTGGTTCGTCAGC
CGTCTGGCCTCCATCGATGCCACGGCTTCCTGCGGCTGCTTCGGTTCCAG
CTCACCCCCTGGCCCGGCTCACCGACGACTGAACCTCGCAGCAGCCGGCG
TGGCCGTGGCGACGGCCGTCGCCACGCTCGCGACCGACCAAGCTGCCGAC
CTCGGCATCATCGTCGACGCCGGGTTCGGAACCTCGCTCGCCGTACTCGT
GCTGATGTCTGTCCTTCTGGCGCCCTTCCTCACGCTGGCGATCGTGCTGG
TGGTCAGCGGGGTCGACAAGCTCCGGCGACCCGACGGAGCAGCATCTGCC
CTGCGATCGGCTCGGATGGCCGCCGCGGTCGGACCGGGCTCGATCCCTCG
GAGTCGGCGACTCGCCCGAACGATGGGCGCGCTCGAAGCCGCCATCGGTG
TCGGCGCCATCGCCGTTCCCTGGGCCACCGACCGAGCCGTGCTCGGTGCG
ATCGTCGCACTGGTCGTGGCCGCCGCCTTCGCCGGTTTCGCCTGGTTCGT
CAGCCGTCTGGCCTCCATCGATGCCACGGCTTCCTGCGGCTGCTTCGGTT
CCAGCTCACCCCCTGGCCCGGCTCACCGACGACTGAACCTCGCAGCAGCC
GGCGTGGCCGTGGCGACGGCCGTCGCCACGCTCGCGACCGACCAAGCTGC
CGACCTCGGCATCATCGTCGACGCCGGGTTCGGAACCTCGCTCGCCGTAC
TCGTGCTG
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