prot_M-pyrifera_M_contig77623.18265.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig77623.18265.1
Unique Nameprot_M-pyrifera_M_contig77623.18265.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length175
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig77623.18265.1 vs. uniprot
Match: A0A813BI58_9DINO (Chmp2b protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BI58_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 6.390e-10
Identity = 44/119 (36.97%), Postives = 76/119 (63.87%), Query Frame = 0 
Query:    4 GRREVERELRGLEREERRILGQLRVEAKKGGKENPMVRSLAKQLTQVRAGKARLAGTLGTLRGVETQVTVAAATATTGAALGSAAGVLKRGNDAMLKSGALTGVRDFAAAAARMDMSED 122
            G+R+VER+    +RE+ ++  +++  A++G ++  +V++LAKQL Q+R  +A+L G    +  ++ Q+T  AATA+ G A+  A GVLK+ N  M +   +   RDFA A  RMDM+++
Sbjct:   12 GKRDVERQRLVNKREQEKVTAEIKRAARQGNQD--VVKTLAKQLVQLRNHEAKLMGFTANMSSMQMQMTSMAATASMGTAMAKATGVLKQQNAQMQQQNMMHVARDFAMATERMDMTQE 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig77623.18265.1 vs. uniprot
Match: D8LJ70_ECTSI (Similar to chromatin modifying protein 2B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ70_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.910e-7
Identity = 43/122 (35.25%), Postives = 73/122 (59.84%), Query Frame = 0 
Query:    1 MRGGRREVERELRGLEREERRILGQLRVEAKKGGKENPMVRSLAKQLTQVRAGKARLAGTLGTLRGVETQVTVAAATATTGAALGSAAGVLKRGNDAMLKSGALTGVRDFAAAAARMDMSED 122
            +R G R++++E+R L+R E+ ++ +++  AK GG +    R+LAKQL Q+RA K +L      L GV    T AA +A+    +G+ AGV+K+ N+A+        ++ FA    +M+MSE+
Sbjct:   20 VRSGERDLDKEIRNLDRSEKSLVAEIKKTAK-GGNQGA-TRTLAKQLVQLRAQKDQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEE 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig77623.18265.1 vs. uniprot
Match: A0A7S2X3J4_PROMC (Hypothetical protein (Fragment) n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2X3J4_PROMC)

HSP 1 Score: 51.6 bits (122), Expect = 1.430e-5
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 0 
Query:    7 EVERELRGLEREERRILGQLRVEAKKGGKENPMVRSLAKQLTQVRAGKARLAGTLGTLRGVETQVTVAAATATTGAALGSAAGVLKRGNDAM 98
            E++RE   LER+E+R++G+++  AKKG +     R+LAKQL QVR  K ++      L  V+T+ T+ AAT T   ++ S+   +KR N AM
Sbjct:    1 ELDRERAKLERDEQRLIGEIKRAAKKGNEAE--ARTLAKQLVQVRNAKTKMVTMKSQLGAVKTKTTMMAATDTMAQSMKSSTAAMKRANKAM 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77623.18265.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A813BI58_9DINO6.390e-1036.97Chmp2b protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
D8LJ70_ECTSI1.910e-735.25Similar to chromatin modifying protein 2B n=2 Tax=... [more]
A0A7S2X3J4_PROMC1.430e-540.22Hypothetical protein (Fragment) n=1 Tax=Prorocentr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availablePANTHERPTHR10476CHARGED MULTIVESICULAR BODY PROTEINcoord: 1..171
NoneNo IPR availablePANTHERPTHR10476:SF9CHARGED MULTIVESICULAR BODY PROTEIN 2Bcoord: 1..171
IPR005024Snf7 familyPFAMPF03357Snf7coord: 2..165
e-value: 2.1E-17
score: 63.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77623contigM-pyrifera_M_contig77623:56..580 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77623.18265.1mRNA_M-pyrifera_M_contig77623.18265.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig77623 38..580 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig77623.18265.1 ID=prot_M-pyrifera_M_contig77623.18265.1|Name=mRNA_M-pyrifera_M_contig77623.18265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
MRGGRREVERELRGLEREERRILGQLRVEAKKGGKENPMVRSLAKQLTQV
RAGKARLAGTLGTLRGVETQVTVAAATATTGAALGSAAGVLKRGNDAMLK
SGALTGVRDFAAAAARMDMSEDMMDDMLGSLDDADLDDEADDVVASVAAE
IGLEMAADLPSAPHTTHPTPTTTTA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam